Genomicus v100.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for fgf1a (ENSDARG00000017542) (Zebrafish)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	490 species
Bilateria	~580 Mya	488 species
Chordata	~550 Mya	484 species
Vertebrata	~550 Mya	480 species	329 homologs (oldest homol.)
Gnathostomata	~473 Mya	476 species	326 homologs
Euteleostomi	~420 Mya	474 species	325 homologs
Actinopterygii	~386 Mya	153 species	324 homologs
Neopterygii	~314 Mya	151 species	323 homologs
Osteoglossocephalai	~267 Mya	149 species	322 homologs (dupl. node) 317 homologs (dupl. node) 156 homologs
Clupeocephala	~229 Mya	145 species	155 homologs
Otomorpha	~221 Mya	25 species	31 homologs
Otophysi	~152 Mya	21 species	28 homologs
Cyprinidae	~34 Mya	13 species	21 homologs
Zebrafish	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here