Root species for fgf1a (ENSDARG00000017542) (Zebrafish) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 534 species | |
Bilateria | ~580 Mya | 532 species | |
Chordata | ~550 Mya | 528 species | |
Vertebrata | ~550 Mya | 524 species | 342 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 520 species | 339 homologs |
Euteleostomi | ~420 Mya | 518 species | 338 homologs |
Actinopterygii | ~386 Mya | 161 species | 337 homologs |
Neopterygii | ~314 Mya | 159 species | 336 homologs |
Osteoglossocephalai | ~267 Mya | 157 species | 335 homologs (dupl. node) 166 homologs |
Clupeocephala | ~229 Mya | 153 species | 165 homologs |
Otomorpha | ~221 Mya | 25 species | 32 homologs |
Otophysi | ~152 Mya | 21 species | 28 homologs |
Cyprinidae | ~34 Mya | 13 species | 21 homologs |
Zebrafish | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'