Genomicus v109.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PHOX2B (ENSG00000109132) (Human)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	397 species
Bilateria	~580 Mya	395 species
Chordata	~550 Mya	391 species
Vertebrata	~550 Mya	387 species	410 homologs (oldest homol.)
Gnathostomata	~473 Mya	383 species	405 homologs
Euteleostomi	~420 Mya	381 species	403 homologs
Sarcopterygii	~400 Mya	251 species	245 homologs
Tetrapoda	~359 Mya	249 species	243 homologs
Amniota	~326 Mya	245 species	239 homologs
Mammalia	~184 Mya	191 species	189 homologs
Theria	~166 Mya	189 species	187 homologs
Eutheria	~102 Mya	179 species	177 homologs
Boreoeutheria	~95 Mya	169 species	168 homologs
Euarchontoglires	~90 Mya	93 species	91 homologs
Primates	~83 Mya	45 species	44 homologs
Haplorrhini	~57 Mya	37 species	36 homologs
Simiiformes	~45 Mya	35 species	34 homologs
Catarrhini	~30 Mya	29 species	28 homologs
Hominoidea	~25 Mya	11 species	11 homologs
Hominidae	~16 Mya	9 species	9 homologs
Homo/Pan/Gorilla group	~9 Mya	7 species	7 homologs
Homo/Pan group	~5 Mya	5 species	5 homologs
Human	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here