Root species for fgf1a (ENSDARG00000017542) (Zebrafish) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 114 species | |
Bilateria | ~580 Mya | 112 species | 523 homologs (oldest homol.) |
Coelomata | ~570 Mya | 110 species | 521 homologs |
Olfactores | ~550 Mya | 108 species | 519 homologs (dupl. node) 212 homologs |
Pre-1R | ~550 Mya | 104 species | 206 homologs |
Vertebrata | ~550 Mya | 102 species | 204 homologs |
Euteleostomi | ~420 Mya | 100 species | 200 homologs (dupl. node) 113 homologs |
Clupeocephala | ~320 Mya | 14 species | 27 homologs (dupl. node) 14 homologs |
Zebrafish | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'