Genomicus v95.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for fgf1a (ENSDARG00000017542) (Zebrafish)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	279 species
Bilateria	~580 Mya	277 species
Chordata	~550 Mya	273 species
Vertebrata	~550 Mya	269 species	188 homologs (oldest homol.)
Euteleostomi	~420 Mya	265 species	185 homologs
Neopterygii	~314 Mya	95 species	184 homologs
Osteoglossocephalai	~267 Mya	93 species	183 homologs (dupl. node) 92 homologs
Clupeocephala	~229 Mya	89 species	91 homologs
Otophysi	~152 Mya	7 species	7 homologs
Zebrafish	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here