Reference Gene Name: GRMZM2G028033 Ensembl Phytozome
Reference Species : Zea mays Plantlist Tropicos
Root Species : Magnoliophyta (~163 million years)Tropicos 		Magnoliophyta Link Wikipedia to Zea mays Link Ensembl
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Magnoliophyta duplication node (click to collapse) Magnoliophyta (~163 My ago) Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta (~163 My ago) Click to show this node (Commelinids) Commelinids speciation node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae (~41 My ago) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to show this node (Andropogoneae) Andropogoneae duplication node (click to collapse) Click to show this node (Andropogoneae) Andropogoneae speciation node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae (~9 My ago) Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G029900 (Sb01g029900) SB01G029910 (Sb01g029910) SB01G029940 (Sb01g029940) SB01G029965 (Sb01g029965) SB01G029970 (Sb01g029970) SB01G029990 (Sb01g029990) SB01G030000 (Sb01g030000) SB01G030005 (Sb01g030005) SB01G030030 (Sb01g030030) SB01G030035 (Sb01g030035) SB01G030075 (Sb01g030075) SB01G030080 (Sb01g030080) SB01G030083 (Sb01g030083) SB01G030086 (Sb01g030086) SB01G030100 (Sb01g030100) SB01G030120 (Sb01g030120) SB01G030130 (Sb01g030130) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:9 GRMZM2G071055 GRMZM5G803886 AC216199.3_FG001 GRMZM2G094828 AC204402.3_FG002 GRMZM2G363649 GRMZM2G428539 GRMZM2G128537 GRMZM2G428579 GRMZM2G128590 GRMZM2G048695 GRMZM5G815773 GRMZM2G439983 GRMZM5G804470 GRMZM2G440533 GRMZM2G029434 GRMZM2G114033 GRMZM2G114031 GRMZM2G113940 GRMZM2G113873 GRMZM2G329869 GRMZM2G345512 AC197901.3_FG002 AC197901.3_FG003 Click to hide this line (BEP clade) BEP clade speciation node (click to collapse) BEP clade (~40 My ago) - block_4 TreeBeST004395 TreeBeST001584.C.e.a TreeBeST000698.P.c.b TreeBeST000317.L.b TreeBeST004961 TreeBeST008792.W TreeBeST000442.B.c.a TreeBeST000413.K TreeBeST002911.c.a TreeBeST004191.a TreeBeST008660.E.d TreeBeST001476.B TreeBeST005235 TreeBeST001260.C.d TreeBeST000123.XB.d TreeBeST000047.@B TreeBeST000890.F.c.b TreeBeST005249.B TreeBeST002065.d.a TreeBeST002713.B TreeBeST001121.B.h TreeBeST000142.G TreeBeST008628.L TreeBeST008812.I.b TreeBeST000597.F.g.a TreeBeST000283.N.l.a TreeBeST008918.E.h.b Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza (~40 My ago) - block_4 TreeBeST000317.L.b TreeBeST000034.S EPlGT00140000023442 TreeBeST004961.h TreeBeST008792.W TreeBeST000442.B.c.a TreeBeST000413.K TreeBeST002911.c.a TreeBeST004191.a TreeBeST008660.E.d TreeBeST001476.B.j TreeBeST005235 TreeBeST001285.B TreeBeST001260.C.d TreeBeST000123.XB.d TreeBeST000047.@B TreeBeST000890.F.c.b TreeBeST005249.B TreeBeST002065.d.a TreeBeST002713.B TreeBeST001121.B.h TreeBeST000142.G TreeBeST008628.L EPlGT00140000016672 TreeBeST008812.I.b TreeBeST008835.C.f.a.a.a.b.a.b.a.b.a.a.b Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa - block_7 EPlGT00140000013234 EPlGT00140000026161 TreeBeST000225.H.e EPlGT00140000000429.G.b.b TreeBeST008628.L TreeBeST000142.G TreeBeST001121.B.h EPlGT00140000034821 TreeBeST002713.B TreeBeST002065.d.a TreeBeST005249.B TreeBeST000890.F.c.b TreeBeST000047.@B TreeBeST000123.XB.d TreeBeST001260.C.d TreeBeST001285.B TreeBeST005235.c TreeBeST001476.B.j TreeBeST008660.E.d TreeBeST004191.a EPlGT00160000039703 TreeBeST002911.c.a TreeBeST000413.K TreeBeST000442.B.c.a TreeBeST008792.W TreeBeST004961.g.b TreeBeST009518.Z.a EPlGT00140000023442 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:3 OSJNBA0009C08.11 (BGIOSGA011615) OsI_09645 (BGIOSGA011668) OSJNBA0009C08.12 (BGIOSGA011614) OS03G0106200 (BGIOSGA011613) OsI_09648 (BGIOSGA011612) OSJNBA0009C08.14 (BGIOSGA011611) OSJNBA0009C08.16 (BGIOSGA011670) OsI_09655 (BGIOSGA011607) OS03G0107000 (BGIOSGA011606) OsI_09657 (BGIOSGA011671) LSI2 (BGIOSGA011605) OS03G0107500 (BGIOSGA011673) OJ1384D03.4 (BGIOSGA011674) OsI_09663 (BGIOSGA011604) OsI_09664 (BGIOSGA011676) OS03G0107800 (BGIOSGA011603) OS03G0107900 (BGIOSGA011678) CDC25.2 (BGIOSGA011602) OsI_09669 (BGIOSGA011679) OJ1384D03.9 (BGIOSGA011680) OS03G0108400 (BGIOSGA011681) OS03G0108500 (BGIOSGA011600) OsI_09674 (BGIOSGA011682) Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:3 LOC_Os03g01560 LOC_Os03g01570 LOC_Os03g01580 PAIR1 (LOC_Os03g01590) LOC_Os03g01600 LOC_Os03g01614 LOC_Os03g01620 LOC_Os03g01660 LOC_Os03g01670 LOC_Os03g01684 LOC_Os03g01700 LOC_Os03g01720 LOC_Os03g01730 LOC_Os03g01750 LOC_Os03g01760 LOC_Os03g01770 LOC_Os03g01780 LOC_Os03g01790 LOC_Os03g01810 LOC_Os03g01820 LOC_Os03g01830 LOC_Os03g01840 LOC_Os03g01850 LOC_Os03g01860 Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:3 ORGLA03G0002100 ORGLA03G0002200 ORGLA03G0002300 ORGLA03G0002400 ORGLA03G0002500 ORGLA03G0002600 ORGLA03G0002700 ORGLA03G0002800 ORGLA03G0003100 ORGLA03G0003300 ORGLA03G0003400 ORGLA03G0003500 ORGLA03G0003700 ORGLA03G0003800 ORGLA03G0004000 ORGLA03G0004100 ORGLA03G0004200 ORGLA03G0004300 ORGLA03G0004500 ORGLA03G0004600 ORGLA03G0004700 ORGLA03G0004800 ORGLA03G0004900 ORGLA03G0005000 ORGLA03G0005100 Click to hide this line (Pooideae) Pooideae speciation node (click to collapse) Pooideae - block_86 TreeBeST006371 TreeBeST005082 TreeBeST000325.I TreeBeST000051.J TreeBeST008732.C TreeBeST000142.B.d TreeBeST006017 TreeBeST000223.J.a.a.b TreeBeST008628.L TreeBeST000142.G TreeBeST001121.B.h TreeBeST002713.B TreeBeST002065.d.a TreeBeST005249.B TreeBeST001260.C.d TreeBeST000890.F.c.b EPlGT00140000001976 TreeBeST000047.@B TreeBeST005235 TreeBeST001476.B TreeBeST008660.E.d TreeBeST004191.a TreeBeST002911.c.a TreeBeST001584.C.e.a TreeBeST004395 TreeBeST000330.K.a TreeBeST000361.N.a.a Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:1 BRADI1G77957 BRADI1G77970 BRADI1G77980 BRADI1G77997 BRADI1G78010 BRADI1G78015 BRADI1G78020 BRADI1G78027 BRADI1G78040 BRADI1G78057 BRADI1G78070 psbD (BRADI1G78076) psbC (BRADI1G78082) BRADI1G78100 BRADI1G78110 BRADI1G78130 BRADI1G78140 BRADI1G78150 BRADI1G78160 BRADI1G78165 BRADI1G78170 BRADI1G78180 BRADI1G78190 BRADI1G78200 BRADI1G78210 BRADI1G78220 BRADI1G78230 Click to hide this line (Hordeum vulgare subsp vulgare) Hordeum vulgare subsp vulgare terminal node Hordeum vulgare subsp vulgare - Chr:6HL MLOC_37298 MLOC_15847 MLOC_38244 MLOC_24548 MLOC_36682 MLOC_14565 MLOC_65452 MLOC_45501 MLOC_13039 MLOC_21585 MLOC_72530 MLOC_66618 MLOC_66620 MLOC_73375 MLOC_8056 MLOC_38412 MLOC_15890 MLOC_77543 MLOC_80630 MLOC_65886 MLOC_69414 MLOC_43349 MLOC_69919 MLOC_66906 MLOC_12094 MLOC_49979 MLOC_69288 MLOC_37377 MLOC_75903 MLOC_80875 Click to show this node (Dicotyledones) Dicotyledones speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to show this node (eurosids) eurosids speciation node (click to collapse) Click to show this node (fabids) fabids speciation node (click to collapse) Click to show this node (Leguminosae) Leguminosae speciation node (click to collapse) Click to show this node (Papilionoideae) Papilionoideae speciation node (click to collapse) Click to hide this line (Lotus japonicus) Lotus japonicus terminal node Lotus japonicus - Chr:LjSGA_026853 Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta (~163 My ago) Click to hide this line (Commelinids) Commelinids speciation node (click to collapse) Commelinids (~100 My ago) Click to show this node (Musa acuminata subsp malaccensis) Musa acuminata subsp malaccensis duplication node (click to collapse) Click to hide this line (Musa acuminata subsp malaccensis) Musa acuminata subsp malaccensis terminal node Musa acuminata subsp malaccensis - Chr:11 GSMUA_Achr11G21750_001 GSMUA_Achr11G21760_001 GSMUA_Achr11G21770_001 GSMUA_Achr11G21780_001 GSMUA_Achr11G21790_001 GSMUA_Achr11G21800_001 GSMUA_Achr11G21810_001 GSMUA_Achr11G21820_001 GSMUA_Achr11G21830_001 GSMUA_Achr11G21840_001 GSMUA_Achr11G21850_001 GSMUA_Achr11G21860_001 GSMUA_Achr11G21870_001 GSMUA_Achr11G21880_001 GSMUA_Achr11G21890_001 GSMUA_Achr11G21910_001 GSMUA_Achr11G21920_001 GSMUA_Achr11G21930_001 GSMUA_Achr11G21940_001 GSMUA_Achr11G21950_001 GSMUA_Achr11G21960_001 GSMUA_Achr11G21970_001 GSMUA_Achr11G21980_001 GSMUA_Achr11G21990_001 GSMUA_Achr11G22000_001 GSMUA_Achr11G22010_001 GSMUA_Achr11G22020_001 GSMUA_Achr11G22030_001 GSMUA_Achr11G22040_001 GSMUA_Achr11G22050_001 Click to hide this line (Musa acuminata subsp malaccensis) Musa acuminata subsp malaccensis terminal node Musa acuminata subsp malaccensis - Chr:8 GSMUA_Achr8G11420_001 GSMUA_Achr8G11430_001 GSMUA_Achr8G11440_001 GSMUA_Achr8G11450_001 GSMUA_Achr8G11460_001 GSMUA_Achr8G11470_001 GSMUA_Achr8G11480_001 GSMUA_Achr8G11490_001 GSMUA_Achr8G11500_001 GSMUA_Achr8G11520_001 GSMUA_Achr8G11530_001 GSMUA_Achr8G11540_001 GSMUA_Achr8G11550_001 GSMUA_Achr8G11560_001 GSMUA_Achr8G11580_001 GSMUA_Achr8G11590_001 GSMUA_Achr8G11600_001 GSMUA_Achr8G11610_001 GSMUA_Achr8G11620_001 GSMUA_Achr8G11630_001 GSMUA_Achr8G11640_001 GSMUA_Achr8G11650_001 GSMUA_Achr8G11660_001 GSMUA_Achr8G11670_001 GSMUA_Achr8G11680_001 GSMUA_Achr8G11690_001 GSMUA_Achr8G11700_001 GSMUA_Achr8G11710_001 GSMUA_Achr8G11720_001 Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to hide this line (BEP clade) BEP clade speciation node (click to collapse) BEP clade (~40 My ago) Click to show this node (Pooideae) Pooideae speciation node (click to collapse) Click to hide this line (Hordeum vulgare subsp vulgare) Hordeum vulgare subsp vulgare terminal node Hordeum vulgare subsp vulgare - Chr:4 MLOC_72648 MLOC_70063 MLOC_7084 MLOC_64782 MLOC_37252 MLOC_51778 MLOC_33896 MLOC_5021 MLOC_70762 MLOC_18417 MLOC_72925 MLOC_55064 MLOC_58889 MLOC_58890 MLOC_74374 MLOC_15230 MLOC_79748 MLOC_10539 MLOC_45717 MLOC_10437 MLOC_60425 MLOC_60426 MLOC_51915 MLOC_81773 MLOC_16300 MLOC_72818 MLOC_61795 Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza (~40 My ago) - block_11 TreeBeST000693.C TreeBeST006117.A.a EPlGT00140000026567 FAM10351 TreeBeST001260.C.c TreeBeST002056.C.a EPlGT00140000033361 TreeBeST002700.D TreeBeST004191.b TreeBeST002911.c.b TreeBeST006615 TreeBeST001019.G TreeBeST000442.B.d TreeBeST005643 Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa - block_10 TreeBeST000693.C TreeBeST006117.A.a EPlGT00140000026567 FAM10351 TreeBeST001260.C.c TreeBeST002056.C.a EPlGT00140000033361 TreeBeST002700.D TreeBeST004191.b TreeBeST002911.c.b TreeBeST006615 TreeBeST001019.G TreeBeST000442.B.d TreeBeST005643 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:10 OSJNBA0001O14.4 (BGIOSGA031472) OS10G0545400 (BGIOSGA033396) OsI_34535 (BGIOSGA031471) OSJNBA0001O14.6 (BGIOSGA033398) OsI_34540 (BGIOSGA031470) OsI_34542 (BGIOSGA031469) OSJNBA0001O14.15 (BGIOSGA033402) OS10G0547200 (BGIOSGA031466) OSJNBA0001O14.19 (BGIOSGA033406) OS10G0548400 (BGIOSGA033407) OSJNBA0082M15.3 (BGIOSGA031458) BGIOSGA031456 OsI_34563 (BGIOSGA033409) Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:10 LOC_Os10g39830 LOC_Os10g39850 LOC_Os10g39860 LOC_Os10g39880 LOC_Os10g39900 LOC_Os10g39932 LOC_Os10g39934 LOC_Os10g39940 LOC_Os10g39970 LOC_Os10g39980 LOC_Os10g39990 LOC_Os10g40010 LOC_Os10g40070 LOC_Os10g40080 LOC_Os10g40110 Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:10 OB10G24590 OB10G24600 OB10G24610 OB10G24620 OB10G24640 OB10G24650 OB10G24680 OB10G24720 OB10G24730 OB10G24750 OB10G24760 OB10G24780 OB10G24800 OB10G24810 OB10G24820 OB10G24850 OB10G24860 OB10G24870 OB10G24880 OB10G24890 Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:10 ORGLA10G0125500 ORGLA10G0125600 ORGLA10G0125800 ORGLA10G0125900 ORGLA10G0126000 ORGLA10G0126200 ORGLA10G0126600 ORGLA10G0126700 ORGLA10G0126800 ORGLA10G0127000 ORGLA10G0127100 ORGLA10G0127200 ORGLA10G0127400 ORGLA10G0128000 ORGLA10G0128300 Click to show this node (Dicotyledones) Dicotyledones speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to show this node (eurosids) eurosids speciation node (click to collapse) Click to hide this line (Anc arath cacao) Anc arath cacao speciation node (click to collapse) Anc arath cacao (~90 My ago) Click to show this node (Brassicales) Brassicales speciation node (click to collapse) Click to show this node (Brassicaceae) Brassicaceae speciation node (click to collapse) Click to show this node (Camelineae) Camelineae speciation node (click to collapse) Click to hide this line (Capsella rubella) Capsella rubella terminal node Capsella rubella - scaffold_5 Carubv10017502m.g Carubv10018862m.g Carubv10018023m.g Carubv10017594m.g Carubv10018009m.g Carubv10017307m.g Carubv10018146m.g Carubv10018156m.g Carubv10016594m.g Carubv10018755m.g Carubv10018946m.g Carubv10016784m.g Carubv10017795m.g Carubv10019009m.g Carubv10016991m.g Carubv10019059m.g Carubv10019508m.g Carubv10017234m.g Carubv10017470m.g Carubv10019207m.g Carubv10018008m.g Carubv10017071m.g Carubv10018951m.g Carubv10017913m.g Carubv10017888m.g Carubv10019017m.g Carubv10018983m.g Carubv10017601m.g Carubv10018762m.g Carubv10017560m.g Click to hide this line (Theobroma cacao) Theobroma cacao terminal node Theobroma cacao - Chr:Tc01 Tc01_g007970 Tc01_g007980 Tc01_g007990 Tc01_g008000 Tc01_g008020 Tc01_g008030 Tc01_g008040 Tc01_g008050 Tc01_g008060 Tc01_g008070 Tc01_g008080 Tc01_g008090 Tc01_g008100 Tc01_g008110 Tc01_g008130 Tc01_g008140 Tc01_g008150 Tc01_g008160 Tc01_g008170 Tc01_g008180 Tc01_g008190 Tc01_g008191 Tc01_g008200 Tc01_g008201 Tc01_g008210 Tc01_g008220 Tc01_g008221 Tc01_g008230 Tc01_g008240 Click to show this node (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Click to show this node (Commelinids) Commelinids speciation node (click to collapse) Click to show this node (Poaceae) Poaceae duplication node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae (~41 My ago) Click to show this node (BEP clade) BEP clade speciation node (click to collapse) Click to show this node (Pooideae) Pooideae speciation node (click to collapse) Click to hide this line (Hordeum vulgare subsp vulgare) Hordeum vulgare subsp vulgare terminal node Hordeum vulgare subsp vulgare - Chr:1 MLOC_65247 MLOC_56050 MLOC_74531 MLOC_69545 MLOC_16623 MLOC_4399 MLOC_4400 MLOC_67889 MLOC_20566 MLOC_44519 MLOC_65770 MLOC_37122 MLOC_37123 MLOC_63611 MLOC_69347 MLOC_78876 MLOC_38608 MLOC_11603 MLOC_59508 MLOC_57997 MLOC_65693 MLOC_64873 MLOC_5941 MLOC_5942 MLOC_21938 MLOC_23321 MLOC_67213 Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to show this node (Andropogoneae) Andropogoneae speciation node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 TUBB1 (GRMZM2G164696) GRMZM5G831937 GRMZM2G703466 AC195844.2_FG003 GRMZM2G114469 GRMZM2G114459 GRMZM2G458423 GRMZM5G820530 GRMZM2G109725 GRMZM2G411063 GRMZM2G410990 ZmLsi2 (GRMZM2G158378) AC196173.3_FG001 GRMZM2G137296 GRMZM2G459354 GRMZM2G028870 GRMZM2G052546 GRMZM2G120584 GRMZM2G120610 GRMZM2G035377 GRMZM2G085691 GRMZM2G085824 GRMZM2G085827 GRMZM2G085872 GRMZM2G086242 GRMZM2G085885 GRMZM2G086269 GRMZM2G042552 GRMZM2G042539 Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae (~41 My ago) - block_4 TreeBeST000330.K.a TreeBeST004395 TreeBeST001584.C.e.a TreeBeST000698.P.c.b TreeBeST000317.L.b TreeBeST004961 TreeBeST008792.W TreeBeST000413.K TreeBeST002911.c.a TreeBeST004191.a TreeBeST008660.E.d TreeBeST001476.B TreeBeST001285.B TreeBeST001260.C.d TreeBeST000123.XB.d TreeBeST000047.@B TreeBeST000890.F.c.b TreeBeST005249.B TreeBeST002065.d.a TreeBeST002713.B TreeBeST001121.B.h TreeBeST000142.G TreeBeST008628.L TreeBeST000597.F.g.a TreeBeST000283.N.l.a TreeBeST008918.E.h.b Click to show this node (BEP clade) BEP clade speciation node (click to collapse) Click to show this node (Oryza) Oryza speciation node (click to collapse) Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:3 OB03G10400 OB03G10410 OB03G10420 OB03G10430 OB03G10440 OB03G10450 OB03G10460 OB03G10470 OB03G10480 OB03G10510 OB03G10520 OB03G10530 OB03G10540 OB03G10560 OB03G10570 OB03G10580 OB03G10600 OB03G10610 OB03G10620 OB03G10630 OB03G10640 OB03G10650 OB03G10670 OB03G10680 OB03G10690 OB03G10710 Click to hide this line (Panicoideae) Panicoideae speciation node (click to collapse) Panicoideae - block_1 TreeBeST000330.K.a TreeBeST004395 TreeBeST001584.C.e.a TreeBeST000698.P.c.b TreeBeST000317.L.b TreeBeST004961 TreeBeST008792.W TreeBeST000413.K TreeBeST002911.c.a TreeBeST004191.a TreeBeST008660.E.d TreeBeST001476.B TreeBeST001285.B TreeBeST001260.C.d TreeBeST000123.XB.d TreeBeST000047.@B.c TreeBeST000890.F.c.b TreeBeST005249.B TreeBeST002065.d.a TreeBeST003084.W.b.a TreeBeST002713.B TreeBeST001121.B.h TreeBeST000142.G TreeBeST008628.L TreeBeST000513.H.j.b TreeBeST001012.G.c TreeBeST000283.N.l.a Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae (~9 My ago) - block_1 TreeBeST000178.F.g TreeBeST001012.G.c TreeBeST000513.H.j.b TreeBeST008628.L TreeBeST000142.G TreeBeST001121.B.h TreeBeST002713.B TreeBeST003084.W.b.a TreeBeST002065.d.a TreeBeST005249.B TreeBeST000890.F.c.b TreeBeST000047.@B.c TreeBeST000123.XB.d TreeBeST001260.C.d TreeBeST001476.B TreeBeST008660.E.d.a TreeBeST004191.a TreeBeST002911.d.b TreeBeST002911.c.a TreeBeST000413.K TreeBeST008792.W TreeBeST004961 TreeBeST001832.A TreeBeST000698.P.c.b.a TreeBeST001584.C.e.a TreeBeST004395 TreeBeST000330.K.a.a Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G050030 (Sb01g050030) SB01G050040 (Sb01g050040) SB01G050050 (Sb01g050050) SB01G050060 (Sb01g050060) SB01G050080 (Sb01g050080) SB01G050085 (Sb01g050085) SB01G050090 (Sb01g050090) SB01G050092 (Sb01g050092) SB01G050095 (Sb01g050095) SB01G050097 (Sb01g050097) SB01G050100 (Sb01g050100) SB01G050110 (Sb01g050110) Sb01g050120 SB01G050150 (Sb01g050150) SB01G050160 (Sb01g050160) SB01G050163 (Sb01g050163) SB01G050166 (Sb01g050166) SB01G050170 (Sb01g050170) Sb01g050250 SB01G050260 (Sb01g050260) SB01G050270 (Sb01g050270) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:9 GRMZM2G393334 GRMZM2G092497 GRMZM2G092456 GRMZM2G436703 GRMZM2G037327 GRMZM2G037193 GRMZM5G831393 GRMZM2G148057 GRMZM2G449359 GRMZM2G110258 GRMZM2G110236 GRMZM2G110116 GRMZM2G109987 GRMZM5G847608 GRMZM2G165939 GRMZM2G413334 GRMZM5G871180 GRMZM2G413362 GRMZM2G113245 GRMZM2G113267 GRMZM2G171089 AC190533.4_FG006 GRMZM2G055785 GRMZM2G055862 GRMZM2G354746 GRMZM2G055899 GRMZM2G354851 GRMZM2G515450 GRMZM5G860824 Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_9 Si038740m.g Si034592m.g Si037301m.g Si038672m.g Si036073m.g Si039279m.g Si034810m.g Si038007m.g Si035828m.g Si035550m.g Si037977m.g Si036653m.g Si036488m.g Si035505m.g Si034532m.g Si036468m.g Si036293m.g Si034582m.g Si038117m.g Si035973m.g Si037932m.g Si038664m.g Si034173m.g Si033838m.g Si035956m.g Click to show this node (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Click to show this node (Commelinids) Commelinids speciation node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae (~41 My ago) - block_18 TreeBeST000316.E.c TreeBeST005643 TreeBeST000442.B.d TreeBeST001019.G TreeBeST006615 TreeBeST002911.c.b TreeBeST004191.b TreeBeST002700.D TreeBeST002056.C.a TreeBeST001260.C.c TreeBeST000693.C TreeBeST005264.A TreeBeST000890.F.c.a TreeBeST002065.d.b TreeBeST000243.D.g.a EPlGT00140000010117 TreeBeST000287.R Click to show this node (BEP clade) BEP clade speciation node (click to collapse) Click to show this node (Pooideae) Pooideae speciation node (click to collapse) Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:3 BRADI3G32567 BRADI3G32580 BRADI3G32590 BRADI3G32595 BRADI3G32600 BRADI3G32610 BRADI3G32630 BRADI3G32640 BRADI3G32650 BRADI3G32680 BRADI3G32720 BRADI3G32730 BRADI3G32740 BRADI3G32750 BRADI3G32820 BRADI3G32830 BRADI3G32840 BRADI3G32850 BRADI3G32860 Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_9 Si038723m.g Si038558m.g Si040123m.g Si039153m.g Si037142m.g Si038346m.g Si039568m.g Si035362m.g Si037494m.g Si040476m.g Si039573m.g Si034061m.g Si038833m.g Si040767m.g Si040820m.g Si038008m.g Si040359m.g Si034890m.g Si039448m.g Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta (~163 My ago) Click to show this node (Dicotyledones) Dicotyledones speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to hide this line (eurosids) eurosids speciation node (click to collapse) eurosids (~107 My ago) Click to show this node (fabids) fabids speciation node (click to collapse) Click to hide this line (Populus trichocarpa) Populus trichocarpa terminal node Populus trichocarpa - Chr:6 POPTRDRAFT_589531 (POPTR_0006s12050) POPTR_0006s12060 POPTRDRAFT_589529 (POPTR_0006s12080) POPTRDRAFT_916054 (POPTR_0006s12090) POPTRDRAFT_589527 (POPTR_0006s12100) POPTRDRAFT_589526 (POPTR_0006s12110) POPTRDRAFT_676122 (POPTR_0006s12120) POPTR_0006s12130 POPTRDRAFT_589523 (POPTR_0006s12140) COMTL4 (POPTR_0006s12160) POPTRDRAFT_916479 (POPTR_0006s12170) POPTR_0006s12180 POPTR_0006s12190 POPTRDRAFT_589514 (POPTR_0006s12220) POPTRDRAFT_676110 (POPTR_0006s12230) XM_002326181.1 (POPTR_0006s12240) POPTR_0006s12250 POPTRDRAFT_781150 (POPTR_0006s12260) POPTRDRAFT_781149 (POPTR_0006s12270) POPTRDRAFT_589509 (POPTR_0006s12280) POPTRDRAFT_836244 (POPTR_0006s12290) POPTRDRAFT_282262 (POPTR_0006s12300) POPTRDRAFT_667866 (POPTR_0006s12310) POPTR_0006s12320 POPTRDRAFT_676092 (POPTR_0006s12330) POPTR_0006s12340 POPTRDRAFT_589502 (POPTR_0006s12350) Click to show this node (Anc arath cacao) Anc arath cacao speciation node (click to collapse) Click to show this node (Brassicales) Brassicales speciation node (click to collapse) Click to show this node (Brassicaceae) Brassicaceae speciation node (click to collapse) Click to show this node (Brassiceae) Brassiceae speciation node (click to collapse) Click to show this node (Eutremeae) Eutremeae speciation node (click to collapse) Click to hide this line (Thellungiella halophila) Thellungiella halophila terminal node Thellungiella halophila - scaffold_5 Thhalv10009343m.g Thhalv10008925m.g Thhalv10008860m.g Thhalv10008809m.g Thhalv10007815m.g Thhalv10008697m.g Thhalv10007164m.g Thhalv10009351m.g Thhalv10008054m.g Thhalv10009489m.g Thhalv10008630m.g Thhalv10009896m.g Thhalv10007980m.g Thhalv10010019m.g Thhalv10007975m.g Thhalv10006589m.g Thhalv10008511m.g Thhalv10007191m.g Thhalv10007702m.g Thhalv10006816m.g Thhalv10006828m.g Thhalv10007334m.g Thhalv10007253m.g Thhalv10007079m.g Thhalv10007425m.g Thhalv10007439m.g Thhalv10007466m.g Thhalv10007507m.g Thhalv10007422m.g Click to show this node (Commelinids) Commelinids speciation node (click to collapse) Click to hide this line (Musa acuminata subsp malaccensis) Musa acuminata subsp malaccensis terminal node Musa acuminata subsp malaccensis - Chr:4 GSMUA_Achr4G29190_001 GSMUA_Achr4G29200_001 GSMUA_Achr4G29210_001 GSMUA_Achr4G29220_001 GSMUA_Achr4G29230_001 GSMUA_Achr4G29240_001 GSMUA_Achr4G29250_001 GSMUA_Achr4G29260_001 GSMUA_Achr4G29270_001 GSMUA_Achr4G29280_001 GSMUA_Achr4G29290_001 GSMUA_Achr4G29300_001 GSMUA_Achr4G29310_001 GSMUA_Achr4G29320_001 GSMUA_Achr4G29330_001 GSMUA_Achr4G29350_001 GSMUA_Achr4G29360_001 GSMUA_Achr4G29370_001 GSMUA_Achr4G29380_001 GSMUA_Achr4G29390_001 GSMUA_Achr4G29400_001 GSMUA_Achr4G29410_001 GSMUA_Achr4G29420_001 GSMUA_Achr4G29430_001 GSMUA_Achr4G29440_001 GSMUA_Achr4G29450_001 GSMUA_Achr4G29460_001 GSMUA_Achr4G29470_001 GSMUA_Achr4G29480_001 GSMUA_Achr4G29490_001 Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta (~163 My ago) Click to show this node (Commelinids) Commelinids speciation node (click to collapse) Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_6 Si014449m.g Si013186m.g Si015315m.g Si015696m.g Si015606m.g Si014405m.g Si015190m.g Si013225m.g Si014559m.g Si015199m.g Si014026m.g Si013947m.g Si015928m.g Si015837m.g Si015874m.g Si014521m.g Si013458m.g Si015018m.g Si014621m.g Si014694m.g Si013920m.g Si013917m.g Si015992m.g Si013680m.g Si014435m.g Si016038m.g Si014770m.g Si013886m.g Si015437m.g Si014650m.g Click to hide this line (Dicotyledones) Dicotyledones speciation node (click to collapse) Dicotyledones (~110 My ago) - block_93 TreeBeST008753.Q.a.b.a TreeBeST008753.N TreeBeST000323.K TreeBeST008815.D TreeBeST000018.EB TreeBeST003438.A TreeBeST008801.C TreeBeST008938.B TreeBeST000325.D.b.b TreeBeST005978 TreeBeST000577.T.a TreeBeST000276.H TreeBeST008790.G.a TreeBeST000960.A TreeBeST001894.A.a.a TreeBeST006371 TreeBeST003140 Click to hide this line (Solanum) Solanum speciation node (click to collapse) Solanum (~3 My ago) - block_12 TreeBeST000960.A TreeBeST008790.G.a.b.b.a TreeBeST000012.P TreeBeST000099.J.b TreeBeST000275.C.b.b TreeBeST004487.A.a TreeBeST000276.H.a TreeBeST000577.T.a TreeBeST000325.D.b.b TreeBeST008938.B.a TreeBeST008801.C.a TreeBeST003438.A TreeBeST000018.EB.a TreeBeST008753.Q.a.a.b TreeBeST000323.K.a TreeBeST001539.A.a.b.b.a.b.b.b TreeBeST003822.A TreeBeST000131.O.a.a TreeBeST000041.A.b TreeBeST003590.D TreeBeST008635.G.a.b TreeBeST003526.A TreeBeST000234.N TreeBeST003019.B TreeBeST002731.A TreeBeST001527.E TreeBeST004126 TreeBeST009585.D.a.a TreeBeST000090.Z Click to hide this line (Solanum tuberosum) Solanum tuberosum terminal node Solanum tuberosum - Chr:ST4.02ch09 PGSC0003DMG400012982 (PGSC0003DMG400012982) PGSC0003DMG400012989 (PGSC0003DMG400012989) PGSC0003DMG400046725 (PGSC0003DMG400046725) PGSC0003DMG400043255 (PGSC0003DMG400043255) PGSC0003DMG400044414 (PGSC0003DMG400044414) PGSC0003DMG400043714 (PGSC0003DMG400043714) PGSC0003DMG400046284 (PGSC0003DMG400046284) PGSC0003DMG400039322 (PGSC0003DMG400039322) PGSC0003DMG400034995 (PGSC0003DMG400034995) PGSC0003DMG400003904 (PGSC0003DMG400003904) PGSC0003DMG400003880 (PGSC0003DMG400003880) PGSC0003DMG400036652 (PGSC0003DMG400036652) PGSC0003DMG400003879 (PGSC0003DMG400003879) PGSC0003DMG400043390 (PGSC0003DMG400043390) PGSC0003DMG400003902 (PGSC0003DMG400003902) PGSC0003DMG400003901 (PGSC0003DMG400003901) PGSC0003DMG400003878 (PGSC0003DMG400003878) PGSC0003DMG400043520 (PGSC0003DMG400043520) PGSC0003DMG400003877 (PGSC0003DMG400003877) PGSC0003DMG400003910 (PGSC0003DMG400003910) PGSC0003DMG400003909 (PGSC0003DMG400003909) PGSC0003DMG400003908 (PGSC0003DMG400003908) PGSC0003DMG402003900 (PGSC0003DMG402003900) PGSC0003DMG401003900 (PGSC0003DMG401003900) PGSC0003DMG402003899 (PGSC0003DMG402003899) PGSC0003DMG401003899 (PGSC0003DMG401003899) PGSC0003DMG400003874 (PGSC0003DMG400003874) PGSC0003DMG400003898 (PGSC0003DMG400003898) PGSC0003DMG400003873 (PGSC0003DMG400003873) Click to hide this line (Solanum lycopersicum) Solanum lycopersicum terminal node Solanum lycopersicum - Chr:9 Solyc09g008380.2 Solyc09g008390.1 Solyc09g008400.2 Solyc09g008410.2 Solyc09g008420.2 Solyc09g008430.2 Solyc09g008440.1 Solyc09g008450.2 Solyc09g008460.2 Solyc09g008470.2 Solyc09g008480.2 Solyc09g008490.2 Solyc09g008500.1 Solyc09g008510.1 Solyc09g008520.2 Solyc09g008540.1 Solyc09g008550.2 Solyc09g008560.2 Solyc09g008590.2 Solyc09g008600.2 Solyc09g008610.2 Solyc09g008620.1 Solyc09g008630.2 Solyc09g008640.1 Solyc09g008650.2 Solyc09g008660.2 TD (Solyc09g008670.2) Solyc09g008680.2 Solyc09g008690.1 Solyc09g008700.1 Click to hide this line (rosids) rosids speciation node (click to collapse) rosids (~110 My ago) - block_27 TreeBeST002731.A TreeBeST003019.B TreeBeST000234.N TreeBeST008847.M TreeBeST002561.A.a TreeBeST008635.G.a TreeBeST000041.A TreeBeST000105.M.b TreeBeST003235.A TreeBeST006201.a TreeBeST002919 TreeBeST000074.R.a.a.b TreeBeST008815.D TreeBeST000323.K Click to hide this line (Vitis vinifera) Vitis vinifera terminal node Vitis vinifera - Chr:8 Vv08s0007g04350 Vv08s0007g04360 Vv08s0007g04370 Vv08s0007g04380 Vv08s0007g04390 Vv08s0007g04400 Vv08s0007g04430 Vv08s0007g04440 Vv08s0007g04460 Vv08s0007g04470 Vv08s0007g04480 Vv08s0007g04490 Vv08s0007g04500 Vv08s0007g04520 Vv08s0007g04540 Vv08s0007g04550 Vv08s0007g04560 Vv08s0007g04570 Vv08s0007g04580 Vv08s0007g04590 Vv08s0007g04600 Vv08s0007g04610 Vv08s0007g04620 Vv08s0007g04630 Vv08s0007g04650 Vv08s0007g04670 Vv08s0007g04680 Click to hide this line (eurosids) eurosids speciation node (click to collapse) eurosids (~107 My ago) - block_20 TreeBeST000012.Q TreeBeST003452.b TreeBeST001730.A.a TreeBeST002746.C TreeBeST001285.A.b.b TreeBeST001997.A TreeBeST002700.C TreeBeST000334.J.b.a.b TreeBeST000334.J.b.b.a TreeBeST003177.D TreeBeST000100.L.b.a.a.b TreeBeST000439.L TreeBeST000952.Q TreeBeST008815.D TreeBeST000323.K TreeBeST007032.D TreeBeST006104 TreeBeST002700.B TreeBeST001476.B TreeBeST002067.A TreeBeST003645.i.a TreeBeST003645.i.b.b TreeBeST001787.A TreeBeST001148.F TreeBeST009590.B TreeBeST001774.A.c.a TreeBeST000352.A TreeBeST002993.B.b TreeBeST001843.H TreeBeST000136.B.f.b Click to hide this line (fabids) fabids speciation node (click to collapse) fabids (~100 My ago) - block_3 TreeBeST003693.A TreeBeST008821.H.b.b TreeBeST000400.L.b TreeBeST000400.L.a.a TreeBeST001904.I TreeBeST000064.A.a TreeBeST001256.D TreeBeST003747 TreeBeST001042.A.a TreeBeST002015.D TreeBeST000765.D.a.a.a TreeBeST008885.A.a.a.c.b.a TreeBeST006899.A TreeBeST008815.D TreeBeST000323.K TreeBeST008603.X TreeBeST000131.O.a.b.b TreeBeST000131.O.a.a TreeBeST003822.A TreeBeST008787.M.b TreeBeST000074.R.a.a.b TreeBeST002919 TreeBeST006201.a TreeBeST003235.A TreeBeST000041.A.c TreeBeST008635.G.a TreeBeST002561.A.a TreeBeST008847.M Click to hide this line (Populus trichocarpa) Populus trichocarpa terminal node Populus trichocarpa - Chr:8 POPTRDRAFT_563663 (POPTR_0008s02830) POPTR_0008s02840 POPTR_0008s02850 POPTR_0008s02860 POPTR_0008s02870 POPTR_0008s02880 POPTR_0008s02890 POPTR_0008s02900 POPTR_0008s02910 POPTR_0008s02920 POPTR_0008s02930 POPTR_0008s02940 POPTR_0008s02950 POPTR_0008s02960 POPTR_0008s02970 POPTR_0008s02990 POPTR_0008s03000 POPTR_0008s03010 POPTR_0008s03020 POPTR_0008s03030 POPTR_0008s03040 POPTR_0008s03050 HTB902 (POPTR_0008s03060) POPTR_0008s03070 POPTRDRAFT_765221 (POPTR_0008s03080) POPTRDRAFT_765222 (POPTR_0008s03090) POPTRDRAFT_765223 (POPTR_0008s03100) POPTRDRAFT_563656 (POPTR_0008s03110) POPTRDRAFT_563662 (POPTR_0008s03120) POPTR_0008s03130 Click to hide this line (Leguminosae) Leguminosae speciation node (click to collapse) Leguminosae (~97 My ago) - block_1 TreeBeST002561.A.a TreeBeST008635.G.a TreeBeST000041.A.c TreeBeST003235.A TreeBeST006201.a TreeBeST002919 TreeBeST000074.R.a.a.a TreeBeST000074.R.a.a.b TreeBeST008787.M.b TreeBeST003822.A TreeBeST000131.O.a.a TreeBeST000131.O.a.b.b TreeBeST008603.X TreeBeST000323.K TreeBeST008815.D EPlGT00140000019440 TreeBeST008753.Q.a.b.a TreeBeST003171.A TreeBeST008899.A.c.a.a TreeBeST002805.D TreeBeST008827.E TreeBeST001049.D TreeBeST000018.EB TreeBeST003438.B TreeBeST008801.C TreeBeST008938.B TreeBeST000325.G.b TreeBeST000577.T.a Click to hide this line (Papilionoideae) Papilionoideae speciation node (click to collapse) Papilionoideae (~60 My ago) - block_19 TreeBeST006201.a TreeBeST002919.h TreeBeST000074.R.a.a.a.b TreeBeST008753.Q.a.b.a.f.b TreeBeST008815.D TreeBeST000323.K TreeBeST000131.O.a.a.b TreeBeST003822.A TreeBeST008787.M.b TreeBeST000074.R.a.a.b TreeBeST002919.g TreeBeST003235.A TreeBeST000041.A.c.c TreeBeST008635.G.a.d TreeBeST002561.A.a.b TreeBeST000234.N TreeBeST002731.A.a TreeBeST000090.Z.d.a TreeBeST008798.V Click to show this node (Glycine max) Glycine max duplication node (click to collapse) Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm10 GLYMA10G06990 GLYMA10G07005 GLYMA10G07020 GLYMA10G07030 GLYMA10G07050 GLYMA10G07060 GLYMA10G07075 GLYMA10G07090 GLYMA10G07110 GLYMA10G07120 GLYMA10G07133 GLYMA10G07146 GLYMA10G07160 GLYMA10G07170 GLYMA10G07180 GLYMA10G07220 GLYMA10G07230 GLYMA10G07240 GLYMA10G07251 GLYMA10G07260 GLYMA10G07270 GLYMA10G07280 GLYMA10G07290 GLYMA10G07300 GLYMA10G07320 GLYMA10G07340 GLYMA10G07351 GLYMA10G07360 GLYMA10G07381 Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm13 GLYMA13G20920 GLYMA13G20930 GLYMA13G20940 GLYMA13G20950 GMA.29279 (GLYMA13G20960) GLYMA13G20970 GLYMA13G20980 GLYMA13G20990 GLYMA13G21010 GLYMA13G21020 GLYMA13G21030 GLYMA13G21050 GLYMA13G21056 GLYMA13G21063 GLYMA13G21070 GLYMA13G21096 GLYMA13G21120 GLYMA13G21131 GLYMA13G21140 GLYMA13G21155 GLYMA13G21170 GLYMA13G21180 GLYMA13G21190 GLYMA13G21200 GLYMA13G21211 GLYMA13G21220 GLYMA13G21230 GLYMA13G21240 GLYMA13G21250 Click to hide this line (Lotus japonicus) Lotus japonicus terminal node Lotus japonicus - Chr:chr5.CM1077 chr5.CM1077.420.r2.m chr5.CM1077.440.r2.m chr5.CM1077.450.r2.m chr5.CM1077.470.r2.m chr5.CM1077.480.r2.m chr5.CM1077.490.r2.m chr5.CM1077.550.r2.m chr5.CM1077.560.r2.m chr5.CM1077.580.r2.m chr5.CM1077.590.r2.m chr5.CM1077.600.r2.m chr5.CM1077.610.r2.m chr5.CM1077.620.r2.m chr5.CM1077.630.r2.m chr5.CM1077.640.r2.m chr5.CM1077.690.r2.m Click to hide this line (Rosaceae) Rosaceae speciation node (click to collapse) Rosaceae - block_5 TreeBeST006897 TreeBeST000234.N TreeBeST002561.A.a TreeBeST008635.G.a TreeBeST000041.A.c TreeBeST000105.M.a.b TreeBeST003235.A TreeBeST006201.a TreeBeST002919 TreeBeST000074.R.a.a.a TreeBeST003822.A TreeBeST000131.O.a.b.b TreeBeST008603.X TreeBeST000323.K TreeBeST008815.D TreeBeST008753.Q.b TreeBeST008753.Q.a.b.b.b.a.a TreeBeST008753.Q.a.b.a.c TreeBeST003171.A TreeBeST008899.A.c.a.a.b TreeBeST002805.D TreeBeST008827.E.b TreeBeST008827.E.a.b TreeBeST001049.D TreeBeST000018.EB TreeBeST003438.B TreeBeST008801.C TreeBeST008938.B Click to hide this line (Fragaria vesca) Fragaria vesca terminal node Fragaria vesca - Chr:LG6 gene00948-v1.0-hybrid gene00949-v1.0-hybrid gene00951-v1.0-hybrid gene00952-v1.0-hybrid gene00953-v1.0-hybrid gene00954-v1.0-hybrid gene33847-v1.0-hybrid gene00955-v1.0-hybrid gene00956-v1.0-hybrid gene00957-v1.0-hybrid gene00958-v1.0-hybrid gene00960-v1.0-hybrid gene00961-v1.0-hybrid gene00963-v1.0-hybrid gene00964-v1.0-hybrid gene00091-v1.0-hybrid gene00092-v1.0-hybrid gene00093-v1.0-hybrid gene00094-v1.0-hybrid gene00095-v1.0-hybrid gene00096-v1.0-hybrid gene00097-v1.0-hybrid gene00098-v1.0-hybrid gene00099-v1.0-hybrid gene00100-v1.0-hybrid gene00101-v1.0-hybrid gene00102-v1.0-hybrid gene21576-v1.0-hybrid Click to hide this line (Prunus persica) Prunus persica terminal node Prunus persica - scaffold_7 ppa010848m.g ppa019811m.g ppa002623m.g ppa020841m.g ppa004672m.g ppa004123m.g ppa020042m.g ppa010815m.g ppa011630m.g ppa013731m.g ppa018778m.g ppa007337m.g ppa007420m.g ppa001370m.g ppa023784m.g ppa019633m.g ppa018836m.g ppa004804m.g ppa004825m.g ppa018454m.g ppa014729m.g ppa004786m.g ppa000201m.g ppa021393m.g ppa001481m.g ppa021118m.g ppa009524m.g ppa000936m.g Click to hide this line (Anc arath cacao) Anc arath cacao speciation node (click to collapse) Anc arath cacao (~90 My ago) Click to hide this line (Theobroma cacao) Theobroma cacao terminal node Theobroma cacao - Chr:Tc10 Tc10_g007632 Tc10_g007640 Tc10_g007641 Tc10_g007642 Tc10_g007650 Tc10_g007660 Tc10_g007670 Tc10_g007671 Tc10_g007680 Tc10_g007681 Tc10_g007682 Tc10_g007690 Tc10_g007691 Tc10_g007700 Tc10_g007701 Tc10_g007711 Tc10_g007720 Tc10_g007721 Tc10_g007722 Tc10_g007730 Tc10_g007731 Tc10_g007740 Tc10_g007741 Tc10_g007750 Tc10_g007760 Tc10_g007770 Tc10_g007780 Tc10_g007790 Tc10_g007800 Tc10_g007810 Click to hide this line (Brassicales) Brassicales speciation node (click to collapse) Brassicales Click to hide this line (Carica papaya) Carica papaya terminal node Carica papaya - Chr:supercontig_5 evm.TU.supercontig_5.121 evm.TU.supercontig_5.122 evm.TU.supercontig_5.123 evm.TU.supercontig_5.125 evm.TU.supercontig_5.126 evm.TU.supercontig_5.127 evm.TU.supercontig_5.128 evm.TU.supercontig_5.129 evm.TU.supercontig_5.130 evm.TU.supercontig_5.132 evm.TU.supercontig_5.133 evm.TU.supercontig_5.134 evm.TU.supercontig_5.135 evm.TU.supercontig_5.137 evm.TU.supercontig_5.138 evm.TU.supercontig_5.139 evm.TU.supercontig_5.140 evm.TU.supercontig_5.141 evm.TU.supercontig_5.142 evm.TU.supercontig_5.143 evm.TU.supercontig_5.144 evm.TU.supercontig_5.145 evm.TU.supercontig_5.146 evm.TU.supercontig_5.147 evm.TU.supercontig_5.149 evm.TU.supercontig_5.150 evm.TU.supercontig_5.151 evm.TU.supercontig_5.152 Click to hide this line (Brassicaceae) Brassicaceae speciation node (click to collapse) Brassicaceae (~16 My ago) Click to show this node (Camelineae) Camelineae speciation node (click to collapse) Click to hide this line (Capsella rubella) Capsella rubella terminal node Capsella rubella - scaffold_7 Carubv10004384m.g Carubv10005986m.g Carubv10005990m.g Carubv10006125m.g Carubv10005993m.g Carubv10004417m.g Carubv10005341m.g Carubv10005290m.g Carubv10005112m.g Carubv10007575m.g Carubv10005323m.g Carubv10006252m.g Carubv10005727m.g Carubv10005639m.g Carubv10007085m.g Carubv10005975m.g Carubv10004255m.g Carubv10004872m.g Carubv10004306m.g Carubv10005129m.g Carubv10004502m.g Carubv10007315m.g Carubv10006419m.g Carubv10005123m.g Carubv10005093m.g Carubv10007197m.g Carubv10006453m.g Carubv10004441m.g Carubv10007648m.g Carubv10006443m.g Click to show this node (Brassiceae) Brassiceae speciation node (click to collapse) Click to show this node (Eutremeae) Eutremeae speciation node (click to collapse) Click to hide this line (Thellungiella halophila) Thellungiella halophila terminal node Thellungiella halophila - scaffold_6 Thhalv10005176m.g Thhalv10003622m.g Thhalv10004056m.g Thhalv10004539m.g Thhalv10003886m.g Thhalv10004475m.g Thhalv10004810m.g Thhalv10004040m.g Thhalv10004824m.g Thhalv10004848m.g Thhalv10004508m.g Thhalv10004524m.g Thhalv10004188m.g Thhalv10003588m.g Thhalv10003928m.g Thhalv10005200m.g Thhalv10004775m.g Thhalv10003766m.g Thhalv10003538m.g Thhalv10005049m.g Thhalv10005058m.g Thhalv10004268m.g Thhalv10004378m.g Thhalv10004463m.g Thhalv10003811m.g Thhalv10004778m.g Thhalv10004641m.g Thhalv10005000m.g Thhalv10005651m.g Thhalv10005337m.g Click to show this node (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Click to show this node (Dicotyledones) Dicotyledones speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to hide this line (eurosids) eurosids speciation node (click to collapse) eurosids (~107 My ago) Click to show this node (fabids) fabids speciation node (click to collapse) Click to show this node (Leguminosae) Leguminosae speciation node (click to collapse) Click to show this node (Rosaceae) Rosaceae speciation node (click to collapse) Click to hide this line (Fragaria vesca) Fragaria vesca terminal node Fragaria vesca - Chr:unanchored gene20782-v1.0-hybrid gene20783-v1.0-hybrid gene20784-v1.0-hybrid gene20785-v1.0-hybrid gene20786-v1.0-hybrid gene20787-v1.0-hybrid gene20788-v1.0-hybrid gene20789-v1.0-hybrid gene20790-v1.0-hybrid gene20791-v1.0-hybrid gene20792-v1.0-hybrid gene20793-v1.0-hybrid gene20794-v1.0-hybrid gene20795-v1.0-hybrid gene20796-v1.0-hybrid gene20798-v1.0-hybrid gene20799-v1.0-hybrid gene20800-v1.0-hybrid gene20801-v1.0-hybrid gene20802-v1.0-hybrid gene20803-v1.0-hybrid gene20804-v1.0-hybrid gene20805-v1.0-hybrid gene20806-v1.0-hybrid gene20807-v1.0-hybrid gene20808-v1.0-hybrid gene20809-v1.0-hybrid gene20810-v1.0-hybrid gene20811-v1.0-hybrid gene20812-v1.0-hybrid Click to show this node (Anc arath cacao) Anc arath cacao speciation node (click to collapse) Click to show this node (Brassicales) Brassicales speciation node (click to collapse) Click to show this node (Brassicaceae) Brassicaceae speciation node (click to collapse) Click to show this node (Brassiceae) Brassiceae speciation node (click to collapse) Click to show this node (Eutremeae) Eutremeae speciation node (click to collapse) Click to hide this line (Thellungiella parvula) Thellungiella parvula terminal node Thellungiella parvula - Chr:ch5-6 Tp5g23730 Tp5g23750 Tp5g23760 Tp5g23770 Tp5g23780 Tp5g23790 Tp5g23810 Tp5g23800 Tp5g23820 Tp5g23830 Tp5g23840 Tp5g23850 Tp5g23860 Tp5g23870 Tp5g23880 Tp5g23900 Tp5g23910 Tp5g23920 Tp5g23930 Tp5g23940 Tp5g23950 Tp5g23960 Tp5g23970 Tp5g23980 Tp5g23990 Tp5g24000 Tp5g24010 Tp5g24020 Tp5g24030 Tp5g24040 Click to show this node (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Click to show this node (Dicotyledones) Dicotyledones speciation node (click to collapse) Click to hide this line (rosids) rosids speciation node (click to collapse) rosids (~110 My ago) Click to hide this line (eurosids) eurosids speciation node (click to collapse) eurosids (~107 My ago) Click to show this node (fabids) fabids speciation node (click to collapse) Click to hide this line (Leguminosae) Leguminosae speciation node (click to collapse) Leguminosae (~97 My ago) Click to show this node (Rosaceae) Rosaceae speciation node (click to collapse) Click to hide this line (Prunus persica) Prunus persica terminal node Prunus persica - scaffold_1 ppa012145m.g ppa001601m.g ppa005357m.g ppa014171m.g ppa002351m.g ppa020814m.g ppa000806m.g ppa018816m.g ppa023733m.g ppa023867m.g ppa026794m.g ppa025457m.g ppa022190m.g ppa017045m.g ppa017234m.g ppa006535m.g ppa008704m.g ppa010555m.g ppa004900m.g ppa000786m.g ppa005472m.g ppa022665m.g ppa008928m.g ppa016240m.g ppa017015m.g ppa019406m.g ppa005473m.g ppa007994m.g ppa001044m.g Click to show this node (Papilionoideae) Papilionoideae speciation node (click to collapse) Click to hide this line (Lotus japonicus) Lotus japonicus terminal node Lotus japonicus - Chr:chr2.CM0124 chr2.CM0124.10.r2.m chr2.CM0124.20.r2.m chr2.CM0124.30.r2.m chr2.CM0124.40.r2.m chr2.CM0124.50.r2.m chr2.CM0124.60.r2.m chr2.CM0124.70.r2.m chr2.CM0124.80.r2.d chr2.CM0124.90.r2.d chr2.CM0124.110.r2.d chr2.CM0124.120.r2.d chr2.CM0124.130.r2.d chr2.CM0124.140.r2.d chr2.CM0124.150.r2.d chr2.CM0124.160.r2.d chr2.CM0124.170.r2.d chr2.CM0124.190.r2.d chr2.CM0124.210.r2.d chr2.CM0124.220.r2.d chr2.CM0124.260.r2.d chr2.CM0124.280.r2.d chr2.CM0124.290.r2.d chr2.CM0124.300.r2.d Click to hide this line (Anc arath cacao) Anc arath cacao speciation node (click to collapse) Anc arath cacao (~90 My ago) Click to show this node (Brassicales) Brassicales speciation node (click to collapse) Click to show this node (Brassicaceae) Brassicaceae speciation node (click to collapse) Click to show this node (Camelineae) Camelineae speciation node (click to collapse) Click to show this node (Arabidopsis) Arabidopsis speciation node (click to collapse) Click to hide this line (Arabidopsis thaliana) Arabidopsis thaliana terminal node Arabidopsis thaliana - Chr:4 NDH-M (AT4G37925) STM (AT4G37930) AGL21 (AT4G37940) AT4G37950 (AT4G37950) ATCAD6 (AT4G37970) CAD7 (AT4G37980) ELI3 (AT4G37990) DOF4.7 (AT4G38000) AT4G38010 (AT4G38010) AT4G38020 (AT4G38020) AT4G38030 (AT4G38030) AT4G38040 (AT4G38040) AT4G38050 (AT4G38050) AT4G38052 (AT4G38052) AT4G38060 (AT4G38060) AT4G38080 (AT4G38080) AT4G38090 (AT4G38090) AT4G38092 (AT4G38092) AT4G38100 (AT4G38100) AT4G38120 (AT4G38120) ATHD1 (AT4G38130) AT4G38140 (AT4G38140) AT4G38150 (AT4G38150) pde191 (AT4G38160) FRS9 (AT4G38170) FRS5 (AT4G38180) ATCSLD4 (AT4G38190) AT4G38200 (AT4G38200) EXP20 (AT4G38210) AT4G38220 (AT4G38220) Click to hide this line (Theobroma cacao) Theobroma cacao terminal node Theobroma cacao - Chr:Tc10 Tc10_g007050 Tc10_g007060 Tc10_g007070 Tc10_g007080 Tc10_g007090 Tc10_g007100 Tc10_g007110 Tc10_g007120 Tc10_g007130 Tc10_g007140 Tc10_g007150 Tc10_g007160 Tc10_g007170 Tc10_g007171 Tc10_g007180 Tc10_g007200 Tc10_g007210 Tc10_g007220 Tc10_g007230 Tc10_g007231 Tc10_g007240 Tc10_g007241 Tc10_g007250 Tc10_g007260 Tc10_g007270 Tc10_g007280 Tc10_g007281 Tc10_g007282 Tc10_g007290 Tc10_g007300 Click to hide this line (Vitis vinifera) Vitis vinifera terminal node Vitis vinifera - Chr:13 Vv13s0019g05240 Vv13s0019g05250 Vv13s0019g05260 Vv13s0019g05270 Vv13s0019g05280 Vv13s0019g05290 Vv13s0019g05300 Vv13s0019g05310 Vv13s0019g05320 Vv13s0019g05340 Vv13s0019g05350 Vv13s0019g05360 Vv13s0019g05370 Vv13s0019g05380 Vv13s0019g05390 Vv13s0074g00010 Vv13s0074g00030 Vv13s0074g00040 Vv13s0074g00050 Vv13s0074g00060 Vv13s0074g00070 Vv13s0074g00080 Vv13s0074g00090 Vv13s0074g00100 Vv13s0074g00110 Vv13s0074g00130 Vv13s0074g00140 Vv13s0074g00150 Vv13s0074g00160 Vv13s0074g00170 GRMZM2G117833 GRMZM2G090029 SB01G030060 (Sb01g030060) EPlGT00140000007314.A EPlGT00140000007314.A OSJNBA0001O14.8 (BGIOSGA031468) LOC_Os10g39920 OB10G24700 ORGLA10G0126400 EPlGT00140000007314.A BRADI3G32670 Si040208m.g GRMZM2G019353 EPlGT00140000007314.B EPlGT00140000007314.B EPlGT00140000007314.B OS03G0107700 (BGIOSGA011675) OsI_09665 (BGIOSGA011677) LOC_Os03g01740 ORGLA03G0003900 EPlGT00140000007314.B BRADI1G78050 MLOC_7083 EPlGT00140000007314.B OB03G10590 EPlGT00140000007314.B EPlGT00140000007314.B SB01G050130 (Sb01g050130) GRMZM2G413337 Si039635m.g GRMZM2G177400 SB01G030010 (Sb01g030010) GRMZM2G424595 SB01G030070 (Sb01g030070) TreeBeST002819.E.c.a TreeBeST002819.E.c.a OS10G0546300 (BGIOSGA033403) LOC_Os10g39910 OB10G24690 ORGLA10G0126300 TreeBeST002819.E.c.a BRADI3G32660 Si034014m.g GRMZM5G895423 GRMZM2G005480 GRMZM2G177407 TreeBeST009541.IB TreeBeST009541.IB GRMZM2G028033 TreeBeST009541.IB TreeBeST009541.IB TreeBeST009541.IB OS03G0107400 (BGIOSGA011672) LOC_Os03g01710 ORGLA03G0003600 TreeBeST009541.IB BRADI1G78090 MLOC_70120 LjSGA_026853.1 TreeBeST009541.IB.a SB01G030020 (Sb01g030020) GRMZM2G336077 TreeBeST009541.JB TreeBeST009541.JB GSMUA_Achr11G21900_001 GSMUA_Achr8G11570_001 TreeBeST009541.JB MLOC_58892 TreeBeST009541.JB TreeBeST009541.JB OsI_34549 (BGIOSGA031467) LOC_Os10g39950 OB10G24740 ORGLA10G0126900 TreeBeST009541.JB Carubv10017155m.g Tc01_g008010 Tc01_g008120 TreeBeST009541.KB.a MLOC_53357 GRMZM2G329177 TreeBeST009541.KB.b OB03G10550 TreeBeST009541.KB.b TreeBeST009541.KB.b SB01G050140 (Sb01g050140) GRMZM2G113163 Si033916m.g TreeBeST009541.LB BRADI3G32710 Si039617m.g TreeBeST009541.HB TreeBeST009541.HB POPTRDRAFT_589516 (POPTR_0006s12200) POPTRDRAFT_826464 (POPTR_0006s12210) Thhalv10009891m.g Thhalv10006601m.g GSMUA_Achr4G29340_001 TreeBeST009541.FB Si013342m.g TreeBeST009541.FB TreeBeST009541.FB PGSC0003DMG400003903 (PGSC0003DMG400003903) Solyc09g008530.1 TreeBeST009541.FB Vv08s0007g04510 TreeBeST009541.FB TreeBeST009541.FB POPTR_0008s02980 TreeBeST009541.FB TreeBeST009541.FB GLYMA10G07190 GLYMA13G21083 chr5.CM1077.650.r2.m TreeBeST009541.FB gene00962-v1.0-hybrid ppa015244m.g TreeBeST009541.FB Tc10_g007710 TreeBeST009541.FB evm.TU.supercontig_5.136 TreeBeST009541.FB Carubv10003996m.g Thhalv10004133m.g TreeBeST009541.GB gene20797-v1.0-hybrid Tp5g23890 TreeBeST009541.EB TreeBeST009541.EB TreeBeST009541.EB ppa018259m.g ppa000415m.g chr2.CM0124.100.r2.d chr2.CM0124.180.r2.d TreeBeST009541.EB AT4G38070 (AT4G38070) Tc10_g007190 Vv13s0019g05400 GRMZM2G117840 GRMZM2G177391 TreeBeST008785.G.b.b.a.a.b TreeBeST008785.G.b.b.a.a.b OSIPA (BGIOSGA033408) LOC_Os10g40090 OB10G24830 ORGLA10G0128100 TreeBeST008785.G.b.b.a.a BRADI3G32810 GRMZM2G020852 EXPB1 (GRMZM2G146551) GRMZM2G181202 TreeBeST008785.G.b.b.a.b.b TreeBeST008785.G.b.b.a.b.a.b.a TreeBeST008785.G.b.b.a.b.a.a.a.b OsI_09650 (BGIOSGA011669) OS03G0106800 (BGIOSGA011610) OsI_09652 (BGIOSGA011609) OsI_09653 (BGIOSGA011608) LOC_Os03g01610 LOC_Os03g01630 LOC_Os03g01640 LOC_Os03g01650 ORGLA03G0002900 ORGLA03G0003000 ORGLA03G0003200 TreeBeST008785.G.b.b.a.b.b BRADI1G78120 MLOC_45394 TreeBeST008785.G.b.b.a.b.b TreeBeST008785.G.b.b.b.b.b.b.a.a OB03G10490 OB03G10500 TreeBeST008785.G.b.b.a.b.b TreeBeST008785.G.b.b.a.b.b SB01G050180 (Sb01g050180) SB01G050190 (Sb01g050190) SB01G050200 (Sb01g050200) SB01G050210 (Sb01g050210) SB01G050190 (Sb01g050220) SB01G050230 (Sb01g050230) SB01G050240 (Sb01g050240) Si037106m.g Si039870m.g Si039613m.g GRMZM2G017011 SB01G030090 (Sb01g030090) TreeBeST005091 TreeBeST005091 OSJNBA0001O14.14 (BGIOSGA033401) LOC_Os10g39890 OB10G24670 ORGLA10G0126100 TreeBeST005091 BRADI3G32620 Si037746m.g POPTRDRAFT_589530 (POPTR_0006s12070) TreeBeST005091 PGSC0003DMG400012983 (PGSC0003DMG400012983) TreeBeST005091 Vv08s0007g04410 Vv08s0007g04450 TreeBeST005091 TreeBeST005091 TreeBeST005091 TreeBeST005091 gene00950-v1.0-hybrid ppa022106m.g evm.TU.supercontig_5.124 GRMZM5G899428 SB01G030110 (Sb01g030110) TreeBeST005506 TreeBeST005506 OSJNBA0001O14.23 (BGIOSGA033399) LOC_Os10g39870 OB10G24660 ORGLA10G0125700 TreeBeST005506 Si039039m.g GRMZM5G801247 GRMZM2G464885 SB01G029980 (Sb01g029980) TreeBeST000003.D.d.c.a.a TreeBeST000003.D.d.c.b TreeBeST000003.D.d.c.a.b TreeBeST000003.D.d.d TreeBeST000003.D.d.c.a.a TreeBeST000003.D.d.c.b TreeBeST000003.D.d.c.a.b OsI_34552 (BGIOSGA031465) OS10G0547950 (BGIOSGA031464) OSJNBA0082M15.7 (BGIOSGA031463) LOC_Os10g40000 LOC_Os10g40020 LOC_Os10g40030 OB10G24770 ORGLA10G0127300 ORGLA10G0127500 ORGLA10G0127600 TreeBeST000003.D.d BRADI3G32760 Si036544m.g SB01G029950 (Sb01g029950) SB01G029960 (Sb01g029960) GRMZM2G128577 Si039101m.g GRMZM2G178481 GRMZM5G832453 GRMZM2G113761 TreeBeST000448.B.a.a.a.a.b TreeBeST000448.B.a.a.a.a.b OSJNBA0001O14.5 (BGIOSGA033397) LOC_Os10g39840 OB10G24630 ORGLA10G0125400 TreeBeST000448.B.a.a.a.a.b Si039252m.g TreeBeST000448.B.a.a.a.a.a TreeBeST000448.B.a.a.a.a.a TreeBeST000448.B.a.a.a.a.a OS03G0108300 (BGIOSGA011601) LOC_Os03g01800 ORGLA03G0004400 TreeBeST000448.B.a.a.a.a.a BRADI1G77990 MLOC_14923 GRMZM2G388684 TreeBeST000448.B.a.a.a.a.a OB03G10660 TreeBeST000448.B.a.a.a.a.a TreeBeST000448.B.a.a.a.a.a SB01G050070 (Sb01g050070) Si038925m.g GRMZM5G852014 GRMZM2G469371 SB01G030040 (Sb01g030040) TreeBeST009085 TreeBeST009085 OsI_34539 (BGIOSGA033400) OsI_34548 (BGIOSGA033405) LOC_Os10g39936 MLOC_53358 TreeBeST009085 BRADI3G32700 Si037410m.g GRMZM2G143082 GRMZM2G304132 SB01G029930 (Sb01g029930) TreeBeST002156.A TreeBeST002156.A OSJNBA0082M15.6 (BGIOSGA031462) LOC_Os10g40040 ORGLA10G0127700 TreeBeST002156.A BRADI3G32770 Si038681m.g GRMZM2G117804 SB01G029920 (Sb01g029920) GRMZM2G398825 SB01G029925 (Sb01g029925) MLOC_38151 TreeBeST004856.d BRADI3G32780 Si033941m.g TreeBeST004856.c TreeBeST004856.c OsI_34556 (BGIOSGA031461) LOC_Os10g40050 OB10G24790 ORGLA10G0127800 GRMZM2G141254 GRMZM2G132144 GRMZM2G090100 GRMZM2G019430 GRMZM2G046848 TreeBeST008824.O.a.b TreeBeST008824.O.a.b OS10G0548300 (BGIOSGA031460) LOC_Os10g40060 ORGLA10G0127900 GSMUA_Achr8G11510_001 TreeBeST008824.O.b.b.a.a TreeBeST008824.S.c TreeBeST008824.O.b.b.a.a OS10G0548700 (BGIOSGA031459) OSJNBA0082M15.19 (BGIOSGA031457) LOC_Os10g40100 OB10G24840 ORGLA10G0128200 ORGLA10G0128400 MLOC_20351 TreeBeST008824.O.b.b.a.a TreeBeST008824.S BRADI3G32787 BRADI3G32800 AC205537.3_FG003 GRMZM2G143202 SB01G030050 (Sb01g030050) TreeBeST008733.C TreeBeST008733.C OS10G0546600 (BGIOSGA033404) LOC_Os10g39930 OB10G24710 ORGLA10G0126500 TreeBeST008733.C BRADI3G32690 Si035021m.g CYP97C4 (POPTR_0006s12150) Vv08s0007g04530 TreeBeST008733.C TreeBeST008733.C TreeBeST008733.C GLYMA10G07210 GLYMA13G21110 chr5.CM1077.670.r2.m TreeBeST008733.C gene00959-v1.0-hybrid ppa003701m.g evm.TU.supercontig_5.131 GRMZM2G028001 AC205537.3_FG005