Reference Gene Name: LOC_Os03g01670 EnsemblPlants
Reference Species : Oryza sativa Japonica Group
Root Species : Magnoliophyta 		Magnoliophyta Link Wikipedia to Oryza sativa Japonica Group Link Ensembl
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Magnoliophyta speciation node (click to collapse) Magnoliophyta Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to hide this line (commelinids) commelinids speciation node (click to collapse) commelinids Click to show this node (Poaceae) Poaceae duplication node (click to collapse) Click to show this node (Poaceae) Poaceae duplication node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae Click to show this node (BEP clade) BEP clade speciation node (click to collapse) Click to show this node (Oryza) Oryza duplication node (click to collapse) Click to show this node (Oryza) Oryza duplication node (click to collapse) Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza Click to show this node (Oryza sativa) Oryza sativa speciation node (click to collapse) Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:3 Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:3 ORGLA03G0001900 ORGLA03G0002000 ORGLA03G0002500 ORGLA03G0004800 ORGLA03G0004900 Click to show this node (Oryza) Oryza speciation node (click to collapse) Click to show this node (Oryza sativa) Oryza sativa speciation node (click to collapse) Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:3 OsI_09655 (BGIOSGA011607) Click to show this node (Oryza) Oryza speciation node (click to collapse) Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:3 OB03G10380 OB03G10430 OB03G10450 OB03G10460 OB03G10520 OB03G10580 OB03G10610 OB03G10670 OB03G10680 Click to hide this line (Panicoideae) Panicoideae speciation node (click to collapse) Panicoideae Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G050090 (Sb01g050090) SB01G050092 (Sb01g050092) SB01G050095 (Sb01g050095) SB01G050160 (Sb01g050160) SB01G050163 (Sb01g050163) SB01G050280 (Sb01g050280) SB01G050285 (Sb01g050285) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 GRMZM2G060265 GRMZM2G361164 GRMZM2G060296 GRMZM2G176952 GRMZM5G827690 GRMZM5G831937 AC195844.2_FG003 GRMZM2G114459 GRMZM5G820530 GRMZM2G411063 AC196173.3_FG001 GRMZM2G137296 GRMZM2G459354 GRMZM2G120584 GRMZM2G120610 GRMZM2G085824 GRMZM2G085827 GRMZM2G085872 Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_9 Si037301m.g Si038672m.g Si036073m.g Si039279m.g Si037977m.g Si036653m.g Si034582m.g Si038117m.g Si037932m.g Si033838m.g Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (BEP clade) BEP clade speciation node (click to collapse) Click to show this node (Oryza) Oryza duplication node (click to collapse) Click to show this node (Oryza) Oryza speciation node (click to collapse) Click to show this node (Oryza sativa) Oryza sativa duplication node (click to collapse) Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:11 LOC_Os11g29340 LOC_Os11g29350 LOC_Os11g29360 LOC_Os11g29370 LOC_Os11g29380 LOC_Os11g29390 LOC_Os11g29400 LOC_Os11g29410 LOC_Os11g29420 LOC_Os11g29430 LOC_Os11g29440 LOC_Os11g29450 LOC_Os11g29470 LOC_Os11g29460 LOC_Os11g29480 LOC_Os11g29500 LOC_Os11g29510 LOC_Os11g29520 LOC_Os11g29530 LOC_Os11g29540 LOC_Os11g29550 LOC_Os11g29560 LOC_Os11g29570 LOC_Os11g29580 LOC_Os11g29589 LOC_Os11g29600 LOC_Os11g29610 LOC_Os11g29620 LOC_Os11g29630 LOC_Os11g29640 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:11 OsI_36122 (BGIOSGA035271) OS11G0484500 (BGIOSGA035272) OsI_36124 (BGIOSGA035273) OsI_36125 (BGIOSGA033986) OsI_36126 (BGIOSGA033985) OS11G0486000 (BGIOSGA033984) OS11G0487100 (BGIOSGA033983) OS11G0488500 (BGIOSGA035274) OsI_36131 (BGIOSGA033982) OsI_36132 (BGIOSGA033981) OsI_36133 (BGIOSGA035275) OS11G0487600 (BGIOSGA033980) OsI_36135 (BGIOSGA035276) OsI_36136 (BGIOSGA033979) OsI_36137 (BGIOSGA033978) OsI_36139 (BGIOSGA033977) OS05G0199800 (BGIOSGA033976) OsI_36142 (BGIOSGA033975) OsI_36144 (BGIOSGA033974) OsI_36145 (BGIOSGA035280) OsI_36146 (BGIOSGA035281) OsI_36147 (BGIOSGA035282) OS11G0490200 (BGIOSGA035283) OsI_36149 (BGIOSGA035284) OsI_36150 (BGIOSGA035285) OsI_36151 (BGIOSGA035286) OsI_36152 (BGIOSGA035287) OsI_36153 (BGIOSGA035288) Click to show this node (Oryza sativa) Oryza sativa speciation node (click to collapse) Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:11 OS11G0486000 (BGIOSGA033984) OS11G0487100 (BGIOSGA033983) OS11G0488500 (BGIOSGA035274) OsI_36131 (BGIOSGA033982) OsI_36132 (BGIOSGA033981) OsI_36133 (BGIOSGA035275) OS11G0487600 (BGIOSGA033980) OsI_36135 (BGIOSGA035276) OsI_36136 (BGIOSGA033979) OsI_36137 (BGIOSGA033978) OsI_36139 (BGIOSGA033977) OS05G0199800 (BGIOSGA033976) OsI_36142 (BGIOSGA033975) OsI_36144 (BGIOSGA033974) OsI_36145 (BGIOSGA035280) OsI_36146 (BGIOSGA035281) OsI_36147 (BGIOSGA035282) OS11G0490200 (BGIOSGA035283) OsI_36149 (BGIOSGA035284) OsI_36150 (BGIOSGA035285) OsI_36151 (BGIOSGA035286) OsI_36152 (BGIOSGA035287) OsI_36153 (BGIOSGA035288) OS11G0490900 (BGIOSGA035289) OsI_36155 (BGIOSGA033973) OS11G0491400 (BGIOSGA035290) OsI_36157 (BGIOSGA035291) OsI_36158 (BGIOSGA033972) Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:11 LOC_Os11g29600 LOC_Os11g29610 LOC_Os11g29620 LOC_Os11g29630 LOC_Os11g29640 LOC_Os11g29650 LOC_Os11g29660 LOC_Os11g29670 LOC_Os11g29680 LOC_Os11g29690 LOC_Os11g29700 LOC_Os11g29710 LOC_Os11g29720 LOC_Os11g29730 LOC_Os11g29740 LOC_Os11g29760 LOC_Os11g29770 LOC_Os11g29780 LOC_Os11g29790 LOC_Os11g29800 LOC_Os11g29810 LOC_Os11g29820 LOC_Os11g29830 LOC_Os11g29840 LOC_Os11g29850 LOC_Os11g29860 LOC_Os11g29870 LOC_Os11g29880 LOC_Os11g29890 LOC_Os11g29900 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:11 OsI_36124 (BGIOSGA035273) OsI_36125 (BGIOSGA033986) OsI_36126 (BGIOSGA033985) OS11G0486000 (BGIOSGA033984) OS11G0487100 (BGIOSGA033983) OS11G0488500 (BGIOSGA035274) OsI_36131 (BGIOSGA033982) OsI_36132 (BGIOSGA033981) OsI_36133 (BGIOSGA035275) OS11G0487600 (BGIOSGA033980) OsI_36135 (BGIOSGA035276) OsI_36136 (BGIOSGA033979) OsI_36137 (BGIOSGA033978) OsI_36139 (BGIOSGA033977) OS05G0199800 (BGIOSGA033976) OsI_36142 (BGIOSGA033975) OsI_36144 (BGIOSGA033974) OsI_36145 (BGIOSGA035280) OsI_36146 (BGIOSGA035281) OsI_36147 (BGIOSGA035282) OS11G0490200 (BGIOSGA035283) OsI_36149 (BGIOSGA035284) OsI_36150 (BGIOSGA035285) OsI_36151 (BGIOSGA035286) OsI_36152 (BGIOSGA035287) OsI_36153 (BGIOSGA035288) OS11G0490900 (BGIOSGA035289) OsI_36155 (BGIOSGA033973) Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:11 ORGLA11G0116400 ORGLA11G0116500 ORGLA11G0116600 ORGLA11G0116700 ORGLA11G0116800 ORGLA11G0116900 ORGLA11G0117000 ORGLA11G0117100 ORGLA11G0117200 ORGLA11G0117300 ORGLA11G0117400 ORGLA11G0117500 ORGLA11G0117600 ORGLA11G0117700 ORGLA11G0117800 ORGLA11G0118000 ORGLA11G0118100 ORGLA11G0118200 ORGLA11G0118300 ORGLA11G0118400 ORGLA11G0118500 ORGLA11G0118600 ORGLA11G0118700 ORGLA11G0118800 ORGLA11G0118900 ORGLA11G0119000 ORGLA11G0119100 ORGLA11G0119200 ORGLA11G0119300 ORGLA11G0119400 Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to show this node (Andropogoneae) Andropogoneae speciation node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:7 GRMZM2G331217 GRMZM2G029722 GRMZM2G326560 GRMZM5G838909 AC194059.3_FG001 AC194059.3_FG002 GRMZM2G035514 AC195481.3_FG002 GRMZM2G477771 GRMZM2G177892 GRMZM2G451001 AC217237.2_FG002 GRMZM2G320615 AC208309.3_FG002 GRMZM2G110742 GRMZM5G872008 AC184706.2_FG001 AC191731.3_FG001 GRMZM5G850656 GRMZM2G023625 AC191661.3_FG004 GRMZM2G046317 AC191661.3_FG001 GRMZM2G145131 AC191787.3_FG002 GRMZM2G092343 AC206499.3_FG001 GRMZM2G555437 AC213849.3_FG001 AC197168.3_FG001 Click to show this node (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis duplication node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:5 GSMUA_Achr5G22570_001 (GSMUA_Achr5G22570_001) GSMUA_Achr5G22580_001 (GSMUA_Achr5G22580_001) GSMUA_Achr5G22590_001 (GSMUA_Achr5G22590_001) GSMUA_Achr5G22600_001 (GSMUA_Achr5G22600_001) GSMUA_Achr5G22610_001 (GSMUA_Achr5G22610_001) GSMUA_Achr5G22620_001 (GSMUA_Achr5G22620_001) GSMUA_Achr5G22630_001 (GSMUA_Achr5G22630_001) GSMUA_Achr5G22640_001 (GSMUA_Achr5G22640_001) GSMUA_Achr5G22650_001 (GSMUA_Achr5G22650_001) GSMUA_Achr5G22660_001 (GSMUA_Achr5G22660_001) GSMUA_Achr5G22670_001 (GSMUA_Achr5G22670_001) GSMUA_Achr5G22680_001 (GSMUA_Achr5G22680_001) GSMUA_Achr5G22690_001 (GSMUA_Achr5G22690_001) GSMUA_Achr5G22700_001 (GSMUA_Achr5G22700_001) GSMUA_Achr5G22710_001 (GSMUA_Achr5G22710_001) GSMUA_Achr5G22730_001 (GSMUA_Achr5G22730_001) GSMUA_Achr5G22740_001 (GSMUA_Achr5G22740_001) GSMUA_Achr5G22750_001 (GSMUA_Achr5G22750_001) GSMUA_Achr5G22760_001 (GSMUA_Achr5G22760_001) GSMUA_Achr5G22770_001 (GSMUA_Achr5G22770_001) GSMUA_Achr5G22780_001 (GSMUA_Achr5G22780_001) GSMUA_Achr5G22790_001 (GSMUA_Achr5G22790_001) GSMUA_Achr5G22800_001 (GSMUA_Achr5G22800_001) GSMUA_Achr5G22810_001 (GSMUA_Achr5G22810_001) GSMUA_Achr5G22820_001 (GSMUA_Achr5G22820_001) GSMUA_Achr5G22830_001 (GSMUA_Achr5G22830_001) GSMUA_Achr5G22840_001 (GSMUA_Achr5G22840_001) GSMUA_Achr5G22850_001 (GSMUA_Achr5G22850_001) GSMUA_Achr5G22860_001 (GSMUA_Achr5G22860_001) GSMUA_Achr5G22870_001 (GSMUA_Achr5G22870_001) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:10 GSMUA_Achr10G30660_001 (GSMUA_Achr10G30660_001) GSMUA_Achr10G30670_001 (GSMUA_Achr10G30670_001) GSMUA_Achr10G30690_001 (GSMUA_Achr10G30690_001) GSMUA_Achr10G30700_001 (GSMUA_Achr10G30700_001) GSMUA_Achr10G30710_001 (GSMUA_Achr10G30710_001) GSMUA_Achr10G30720_001 (GSMUA_Achr10G30720_001) GSMUA_Achr10G30730_001 (GSMUA_Achr10G30730_001) GSMUA_Achr10G30740_001 (GSMUA_Achr10G30740_001) GSMUA_Achr10G30750_001 (GSMUA_Achr10G30750_001) GSMUA_Achr10G30760_001 (GSMUA_Achr10G30760_001) GSMUA_Achr10G30770_001 (GSMUA_Achr10G30770_001) GSMUA_Achr10G30780_001 (GSMUA_Achr10G30780_001) GSMUA_Achr10G30790_001 (GSMUA_Achr10G30790_001) GSMUA_Achr10G30800_001 (GSMUA_Achr10G30800_001) GSMUA_Achr10G30820_001 (GSMUA_Achr10G30820_001) GSMUA_Achr10G30830_001 (GSMUA_Achr10G30830_001) GSMUA_Achr10G30840_001 (GSMUA_Achr10G30840_001) GSMUA_Achr10G30850_001 (GSMUA_Achr10G30850_001) GSMUA_Achr10G30860_001 (GSMUA_Achr10G30860_001) GSMUA_Achr10G30870_001 (GSMUA_Achr10G30870_001) GSMUA_Achr10G30880_001 (GSMUA_Achr10G30880_001) GSMUA_Achr10G30890_001 (GSMUA_Achr10G30890_001) GSMUA_Achr10G30900_001 (GSMUA_Achr10G30900_001) GSMUA_Achr10G30910_001 (GSMUA_Achr10G30910_001) GSMUA_Achr10G30920_001 (GSMUA_Achr10G30920_001) GSMUA_Achr10G30930_001 (GSMUA_Achr10G30930_001) GSMUA_Achr10G30940_001 (GSMUA_Achr10G30940_001) GSMUA_Achr10G30950_001 (GSMUA_Achr10G30950_001) GSMUA_Achr10G30960_001 (GSMUA_Achr10G30960_001) Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:4 GSMUA_Achr4G20430_001 (GSMUA_Achr4G20430_001) GSMUA_Achr4G20440_001 (GSMUA_Achr4G20440_001) GSMUA_Achr4G20450_001 (GSMUA_Achr4G20450_001) GSMUA_Achr4G20460_001 (GSMUA_Achr4G20460_001) GSMUA_Achr4G20470_001 (GSMUA_Achr4G20470_001) GSMUA_Achr4G20480_001 (GSMUA_Achr4G20480_001) GSMUA_Achr4G20490_001 (GSMUA_Achr4G20490_001) GSMUA_Achr4G20500_001 (GSMUA_Achr4G20500_001) GSMUA_Achr4G20510_001 (GSMUA_Achr4G20510_001) GSMUA_Achr4G20520_001 (GSMUA_Achr4G20520_001) GSMUA_Achr4G20530_001 (GSMUA_Achr4G20530_001) GSMUA_Achr4G20540_001 (GSMUA_Achr4G20540_001) GSMUA_Achr4G20550_001 (GSMUA_Achr4G20550_001) GSMUA_Achr4G20560_001 (GSMUA_Achr4G20560_001) GSMUA_Achr4G20570_001 (GSMUA_Achr4G20570_001) GSMUA_Achr4G20590_001 (GSMUA_Achr4G20590_001) GSMUA_Achr4G20600_001 (GSMUA_Achr4G20600_001) GSMUA_Achr4G20610_001 (GSMUA_Achr4G20610_001) GSMUA_Achr4G20620_001 (GSMUA_Achr4G20620_001) GSMUA_Achr4G20630_001 (GSMUA_Achr4G20630_001) GSMUA_Achr4G20640_001 (GSMUA_Achr4G20640_001) GSMUA_Achr4G20650_001 (GSMUA_Achr4G20650_001) GSMUA_Achr4G20660_001 (GSMUA_Achr4G20660_001) GSMUA_Achr4G20670_001 (GSMUA_Achr4G20670_001) GSMUA_Achr4G20680_001 (GSMUA_Achr4G20680_001) GSMUA_Achr4G20690_001 (GSMUA_Achr4G20690_001) GSMUA_Achr4G20700_001 (GSMUA_Achr4G20700_001) GSMUA_Achr4G20710_001 (GSMUA_Achr4G20710_001) GSMUA_Achr4G20720_001 (GSMUA_Achr4G20720_001) GSMUA_Achr4G20730_001 (GSMUA_Achr4G20730_001) Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to show this node (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis duplication node (click to collapse) Click to show this node (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis duplication node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:1 GSMUA_Achr1G10200_001 (GSMUA_Achr1G10200_001) GSMUA_Achr1G10210_001 (GSMUA_Achr1G10210_001) GSMUA_Achr1G10220_001 (GSMUA_Achr1G10220_001) GSMUA_Achr1G10230_001 (GSMUA_Achr1G10230_001) GSMUA_Achr1G10240_001 (GSMUA_Achr1G10240_001) GSMUA_Achr1G10250_001 (GSMUA_Achr1G10250_001) GSMUA_Achr1G10260_001 (GSMUA_Achr1G10260_001) GSMUA_Achr1G10270_001 (GSMUA_Achr1G10270_001) GSMUA_Achr1G10280_001 (GSMUA_Achr1G10280_001) GSMUA_Achr1G10290_001 (GSMUA_Achr1G10290_001) GSMUA_Achr1G10300_001 (GSMUA_Achr1G10300_001) GSMUA_Achr1G10310_001 (GSMUA_Achr1G10310_001) GSMUA_Achr1G10320_001 (GSMUA_Achr1G10320_001) GSMUA_Achr1G10330_001 (GSMUA_Achr1G10330_001) GSMUA_Achr1G10340_001 (GSMUA_Achr1G10340_001) GSMUA_Achr1G10360_001 (GSMUA_Achr1G10360_001) GSMUA_Achr1G10370_001 (GSMUA_Achr1G10370_001) GSMUA_Achr1G10380_001 (GSMUA_Achr1G10380_001) GSMUA_Achr1G10390_001 (GSMUA_Achr1G10390_001) GSMUA_Achr1G10400_001 (GSMUA_Achr1G10400_001) GSMUA_Achr1G10410_001 (GSMUA_Achr1G10410_001) GSMUA_Achr1G10420_001 (GSMUA_Achr1G10420_001) GSMUA_Achr1G10430_001 (GSMUA_Achr1G10430_001) GSMUA_Achr1G10440_001 (GSMUA_Achr1G10440_001) GSMUA_Achr1G10450_001 (GSMUA_Achr1G10450_001) GSMUA_Achr1G10460_001 (GSMUA_Achr1G10460_001) GSMUA_Achr1G10470_001 (GSMUA_Achr1G10470_001) GSMUA_Achr1G10480_001 (GSMUA_Achr1G10480_001) GSMUA_Achr1G10490_001 (GSMUA_Achr1G10490_001) GSMUA_Achr1G10500_001 (GSMUA_Achr1G10500_001) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:2 GSMUA_Achr2G04740_001 (GSMUA_Achr2G04740_001) GSMUA_Achr2G04750_001 (GSMUA_Achr2G04750_001) GSMUA_Achr2G04760_001 (GSMUA_Achr2G04760_001) GSMUA_Achr2G04770_001 (GSMUA_Achr2G04770_001) GSMUA_Achr2G04780_001 (GSMUA_Achr2G04780_001) GSMUA_Achr2G04790_001 (GSMUA_Achr2G04790_001) GSMUA_Achr2G04800_001 (GSMUA_Achr2G04800_001) GSMUA_Achr2G04810_001 (GSMUA_Achr2G04810_001) GSMUA_Achr2G04820_001 (GSMUA_Achr2G04820_001) GSMUA_Achr2G04830_001 (GSMUA_Achr2G04830_001) GSMUA_Achr2G04840_001 (GSMUA_Achr2G04840_001) GSMUA_Achr2G04850_001 (GSMUA_Achr2G04850_001) GSMUA_Achr2G04860_001 (GSMUA_Achr2G04860_001) GSMUA_Achr2G04870_001 (GSMUA_Achr2G04870_001) GSMUA_Achr2G04880_001 (GSMUA_Achr2G04880_001) GSMUA_Achr2G04900_001 (GSMUA_Achr2G04900_001) GSMUA_Achr2G04910_001 (GSMUA_Achr2G04910_001) GSMUA_Achr2G04920_001 (GSMUA_Achr2G04920_001) GSMUA_Achr2G04930_001 (GSMUA_Achr2G04930_001) GSMUA_Achr2G04940_001 (GSMUA_Achr2G04940_001) GSMUA_Achr2G04950_001 (GSMUA_Achr2G04950_001) GSMUA_Achr2G04960_001 (GSMUA_Achr2G04960_001) GSMUA_Achr2G04970_001 (GSMUA_Achr2G04970_001) GSMUA_Achr2G04980_001 (GSMUA_Achr2G04980_001) GSMUA_Achr2G04990_001 (GSMUA_Achr2G04990_001) GSMUA_Achr2G05000_001 (GSMUA_Achr2G05000_001) GSMUA_Achr2G05010_001 (GSMUA_Achr2G05010_001) GSMUA_Achr2G05020_001 (GSMUA_Achr2G05020_001) GSMUA_Achr2G05030_001 (GSMUA_Achr2G05030_001) GSMUA_Achr2G05040_001 (GSMUA_Achr2G05040_001) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:3 GSMUA_Achr3G27760_001 (GSMUA_Achr3G27760_001) GSMUA_Achr3G27770_001 (GSMUA_Achr3G27770_001) GSMUA_Achr3G27780_001 (GSMUA_Achr3G27780_001) GSMUA_Achr3G27790_001 (GSMUA_Achr3G27790_001) GSMUA_Achr3G27810_001 (GSMUA_Achr3G27810_001) GSMUA_Achr3G27817_001 (GSMUA_Achr3G27817_001) GSMUA_Achr3G27820_001 (GSMUA_Achr3G27820_001) GSMUA_Achr3G27830_001 (GSMUA_Achr3G27830_001) GSMUA_Achr3G27840_001 (GSMUA_Achr3G27840_001) GSMUA_Achr3G27850_001 (GSMUA_Achr3G27850_001) GSMUA_Achr3G27860_001 (GSMUA_Achr3G27860_001) GSMUA_Achr3G27870_001 (GSMUA_Achr3G27870_001) GSMUA_Achr3G27880_001 (GSMUA_Achr3G27880_001) GSMUA_Achr3G27890_001 (GSMUA_Achr3G27890_001) GSMUA_Achr3G27900_001 (GSMUA_Achr3G27900_001) GSMUA_Achr3G27920_001 (GSMUA_Achr3G27920_001) GSMUA_Achr3G27930_001 (GSMUA_Achr3G27930_001) GSMUA_Achr3G27940_001 (GSMUA_Achr3G27940_001) GSMUA_Achr3G27950_001 (GSMUA_Achr3G27950_001) GSMUA_Achr3G27960_001 (GSMUA_Achr3G27960_001) GSMUA_Achr3G27970_001 (GSMUA_Achr3G27970_001) GSMUA_Achr3G27980_001 (GSMUA_Achr3G27980_001) GSMUA_Achr3G27990_001 (GSMUA_Achr3G27990_001) GSMUA_Achr3G28000_001 (GSMUA_Achr3G28000_001) GSMUA_Achr3G28010_001 (GSMUA_Achr3G28010_001) GSMUA_Achr3G28020_001 (GSMUA_Achr3G28020_001) GSMUA_Achr3G28030_001 (GSMUA_Achr3G28030_001) GSMUA_Achr3G28040_001 (GSMUA_Achr3G28040_001) GSMUA_Achr3G28050_001 (GSMUA_Achr3G28050_001) GSMUA_Achr3G28060_001 (GSMUA_Achr3G28060_001) Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:4 GSMUA_Achr4G12500_001 (GSMUA_Achr4G12500_001) GSMUA_Achr4G12510_001 (GSMUA_Achr4G12510_001) GSMUA_Achr4G12520_001 (GSMUA_Achr4G12520_001) GSMUA_Achr4G12530_001 (GSMUA_Achr4G12530_001) GSMUA_Achr4G12540_001 (GSMUA_Achr4G12540_001) GSMUA_Achr4G12550_001 (GSMUA_Achr4G12550_001) GSMUA_Achr4G12560_001 (GSMUA_Achr4G12560_001) GSMUA_Achr4G12570_001 (GSMUA_Achr4G12570_001) GSMUA_Achr4G12580_001 (GSMUA_Achr4G12580_001) GSMUA_Achr4G12590_001 (GSMUA_Achr4G12590_001) GSMUA_Achr4G12600_001 (GSMUA_Achr4G12600_001) GSMUA_Achr4G12610_001 (GSMUA_Achr4G12610_001) GSMUA_Achr4G12620_001 (GSMUA_Achr4G12620_001) GSMUA_Achr4G12630_001 (GSMUA_Achr4G12630_001) GSMUA_Achr4G12640_001 (GSMUA_Achr4G12640_001) GSMUA_Achr4G12660_001 (GSMUA_Achr4G12660_001) GSMUA_Achr4G12670_001 (GSMUA_Achr4G12670_001) GSMUA_Achr4G12680_001 (GSMUA_Achr4G12680_001) GSMUA_Achr4G12690_001 (GSMUA_Achr4G12690_001) GSMUA_Achr4G12700_001 (GSMUA_Achr4G12700_001) GSMUA_Achr4G12710_001 (GSMUA_Achr4G12710_001) GSMUA_Achr4G12720_001 (GSMUA_Achr4G12720_001) GSMUA_Achr4G12730_001 (GSMUA_Achr4G12730_001) GSMUA_Achr4G12740_001 (GSMUA_Achr4G12740_001) GSMUA_Achr4G12750_001 (GSMUA_Achr4G12750_001) GSMUA_Achr4G12760_001 (GSMUA_Achr4G12760_001) GSMUA_Achr4G12770_001 (GSMUA_Achr4G12770_001) GSMUA_Achr4G12780_001 (GSMUA_Achr4G12780_001) GSMUA_Achr4G12790_001 (GSMUA_Achr4G12790_001) GSMUA_Achr4G12800_001 (GSMUA_Achr4G12800_001) Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae Click to hide this line (BEP clade) BEP clade speciation node (click to collapse) BEP clade Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:4 LOC_Os04g56010 LOC_Os04g56020 LOC_Os04g56030 LOC_Os04g56040 LOC_Os04g56050 LOC_Os04g56060 LOC_Os04g56070 LOC_Os04g56080 LOC_Os04g56090 LOC_Os04g56100 LOC_Os04g56110 LOC_Os04g56120 LOC_Os04g56130 LOC_Os04g56140 LOC_Os04g56150 LOC_Os04g56170 LOC_Os04g56180 LOC_Os04g56190 LOC_Os04g56200 LOC_Os04g56210 LOC_Os04g56220 LOC_Os04g56230 LOC_Os04g56240 LOC_Os04g56250 LOC_Os04g56260 LOC_Os04g56280 LOC_Os04g56290 LOC_Os04g56300 LOC_Os04g56309 LOC_Os04g56320 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:4 OsI_17719 (BGIOSGA014199) OsI_17720 (BGIOSGA014198) OsI_17721 (BGIOSGA014197) OSIGBA0147J19.3 (BGIOSGA017264) OSJNBA0071I13.1 (BGIOSGA017265) OSJNBA0071I13.2 (BGIOSGA017266) OSJNBB0022F16.8 (BGIOSGA014196) OsI_17726 (BGIOSGA017267) OSJNBB0022F16.9 (BGIOSGA017268) OSJNBB0022F16.11 (BGIOSGA017269) OSJNBB0022F16.12 (BGIOSGA014195) OSJNBB0022F16.15 (BGIOSGA014194) OSJNBB0022F16.13 (BGIOSGA017270) OSJNBB0022F16.14 (BGIOSGA017271) OSIGBA0147J19.14 (BGIOSGA014193) OsI_17735 (BGIOSGA014192) OSJNBA0011F23.2 (BGIOSGA017273) OsI_17737 (BGIOSGA017274) OsJ_16462 (BGIOSGA017275) OSJNBA0071I13.13 (BGIOSGA014191) OSIGBA0158D24.4 (BGIOSGA014190) OsI_17741 (BGIOSGA014189) OSJNBA0071I13.18 (BGIOSGA014188) OSJNBA0071I13.19 (BGIOSGA017276) OSJNBA0071I13.20 (BGIOSGA014187) OsI_17745 (BGIOSGA017277) 24K23.2 (BGIOSGA017278) 24K23.3 (BGIOSGA017279) 24K23.4 (BGIOSGA017280) 24K23.5 (BGIOSGA014186) Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:4 ORGLA04G0240900 ORGLA04G0241000 ORGLA04G0241100 ORGLA04G0241200 ORGLA04G0241300 ORGLA04G0241400 ORGLA04G0241500 ORGLA04G0241600 ORGLA04G0241700 ORGLA04G0241800 ORGLA04G0241900 ORGLA04G0242000 ORGLA04G0242100 ORGLA04G0242200 ORGLA04G0242300 ORGLA04G0242500 ORGLA04G0242600 ORGLA04G0242700 ORGLA04G0242800 ORGLA04G0242900 ORGLA04G0243000 ORGLA04G0243100 ORGLA04G0243200 ORGLA04G0243300 ORGLA04G0243400 ORGLA04G0243500 ORGLA04G0243600 ORGLA04G0243700 ORGLA04G0243800 ORGLA04G0243900 Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:4 OB04G34820 OB04G34830 OB04G34840 OB04G34850 OB04G34860 OB04G34870 OB04G34880 OB04G34890 OB04G34900 OB04G34910 OB04G34920 OB04G34930 OB04G34940 OB04G34950 OB04G34960 OB04G34980 OB04G34990 OB04G35000 OB04G35010 OB04G35020 OB04G35030 OB04G35040 OB04G35050 OB04G35060 OB04G35070 OB04G35080 OB04G35090 OB04G35100 OB04G35110 OB04G35120 Click to hide this line (Pooideae) Pooideae speciation node (click to collapse) Pooideae Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:5 BRADI5G24542 BRADI5G24550 BRADI5G24560 BRADI5G24570 BRADI5G24580 BRADI5G24590 BRADI5G24600 BRADI5G24610 BRADI5G24620 BRADI5G24630 BRADI5G24640 BRADI5G24650 BRADI5G24660 BRADI5G24670 BRADI5G24680 BRADI5G24700 BRADI5G24710 BRADI5G24720 BRADI5G24730 BRADI5G24737 BRADI5G24750 BRADI5G24760 BRADI5G24770 BRADI5G24780 BRADI5G24790 BRADI5G24800 BRADI5G24810 BRADI5G24820 BRADI5G24830 BRADI5G24836 Click to hide this line (Hordeum vulgare subsp. vulgare) Hordeum vulgare subsp. vulgare terminal node Hordeum vulgare subsp. vulgare - Chr:2 MLOC_10481 MLOC_8307 MLOC_8923 MLOC_67215 MLOC_57452 MLOC_61988 MLOC_9867 MLOC_73371 MLOC_56252 MLOC_55003 MLOC_64248 MLOC_61419 MLOC_11726 MLOC_80158 MLOC_34763 MLOC_61135 MLOC_64730 MLOC_64731 MLOC_65644 MLOC_65646 MLOC_53379 MLOC_69573 MLOC_77571 MLOC_36631 MLOC_14016 MLOC_57811 MLOC_57812 MLOC_57813 MLOC_22342 MLOC_22343 Click to hide this line (Panicoideae) Panicoideae speciation node (click to collapse) Panicoideae Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:2 GRMZM2G039477 GRMZM5G892452 GRMZM2G039532 GRMZM2G039588 LOX6 (GRMZM2G040095) GRMZM2G342564 AC210003.2_FG015 GRMZM2G342607 GRMZM2G040372 GRMZM2G342628 GRMZM2G045049 AC210003.2_FG003 AC210003.2_FG004 LG1 (GRMZM2G036297) GRMZM2G314079 GRMZM2G020043 GRMZM2G314171 GRMZM2G314176 GRMZM2G020210 GRMZM2G067463 GRMZM2G521862 GRMZM2G063328 GRMZM2G363066 GRMZM2G032682 GRMZM2G334734 GRMZM2G468747 GRMZM2G088121 GRMZM2G348539 GRMZM2G046733 GRMZM2G076212 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:10 GRMZM2G009524 GRMZM2G143499 GRMZM2G143480 GRMZM2G143402 GRMZM2G143389 GRMZM2G143356 GRMZM2G143352 GRMZM2G104294 GRMZM2G104291 GRMZM2G104288 GRMZM2G104268 GRMZM2G104260 GRMZM2G104199 GRMZM2G308365 GRMZM2G007477 GRMZM2G006851 GRMZM2G382900 GRMZM2G058588 GRMZM2G101264 GRMZM2G400109 GRMZM2G101260 GRMZM2G101179 GRMZM2G427603 GRMZM2G098279 GLN2 (GRMZM2G098290) GRMZM5G885867 GRMZM2G101347 AC194723.3_FG004 GRMZM2G537524 GRMZM2G092193 Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:6 SB06G031110 (Sb06g031110) SB06G031120 (Sb06g031120) SB06G031130 (Sb06g031130) Sb06g031140 SB06G031150 (Sb06g031150) SB06G031160 (Sb06g031160) SB06G031165 (Sb06g031165) SB06G031170 (Sb06g031170) SB06G031180 (Sb06g031180) SB06G031190 (Sb06g031190) SB06G031195 (Sb06g031195) SB06G031200 (Sb06g031200) SB06G031210 (Sb06g031210) SB06G031220 (Sb06g031220) SB06G031230 (Sb06g031230) SB06G031250 (Sb06g031250) SB06G031260 (Sb06g031260) SB06G031270 (Sb06g031270) SB06G031280 (Sb06g031280) SB06G031290 (Sb06g031290) SB06G031300 (Sb06g031300) SB06G031310 (Sb06g031310) SB06G031320 (Sb06g031320) SB06G031330 (Sb06g031330) SB06G031340 (Sb06g031340) SB06G031350 (Sb06g031350) SB06G031353 (Sb06g031353) SB06G031356 (Sb06g031356) SB06G031360 (Sb06g031360) SB06G031370 (Sb06g031370) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_3 Si021886m.g Si022856m.g Si022001m.g Si023545m.g Si022314m.g Si022078m.g Si021648m.g Si025342m.g Si021967m.g Si022132m.g Si025331m.g Si021625m.g Si024014m.g Si024352m.g Si023251m.g Si022315m.g Si024244m.g Si022620m.g Si022190m.g Si024334m.g Si024865m.g Si022346m.g Si022148m.g Si024857m.g Si022121m.g Si024739m.g Si022353m.g Si021629m.g Si022192m.g Si023791m.g LOC_Os03g01710 ORGLA03G0003600 OS03G0107400 (BGIOSGA011672) OB03G10550 SB01G050140 (Sb01g050140) GRMZM2G329177 Si033916m.g LOC_Os03g01830 ORGLA03G0004700 LOC_Os03g01684 LOC_Os03g01800 ORGLA03G0004400 OS03G0108300 (BGIOSGA011601) OB03G10660 SB01G050070 (Sb01g050070) GRMZM2G388684 Si038925m.g LOC_Os03g01610 LOC_Os03g01780 OsI_09669 (BGIOSGA011679) LOC_Os03g01700 ORGLA03G0003500 LSI2 (BGIOSGA011605) OB03G10540 SB01G050150 (Sb01g050150) ZmLsi2 (GRMZM2G158378) Si035505m.g LOC_Os03g01820 ORGLA03G0004600 LOC_Os03g01660 OS03G0107000 (BGIOSGA011606) OB03G10510 SB01G050170 (Sb01g050170) GRMZM2G109725 Si036468m.g ORGLA03G0003300 LOC_Os03g01550 ORGLA03G0002300 OSJNBA0009C08.11 (BGIOSGA011615) OB03G10410 SB01G050295 (Sb01g050295) GRMZM2G703466 LOC_Os03g01650 ORGLA03G0002900 ORGLA03G0003200 OsI_09650 (BGIOSGA011669) SB01G050180 (Sb01g050180) SB01G050190 (Sb01g050190) SB01G050200 (Sb01g050200) SB01G050210 (Sb01g050210) SB01G050190 (Sb01g050220) SB01G050230 (Sb01g050230) SB01G050240 (Sb01g050240) Si037106m.g Si039870m.g Si039613m.g OB03G10490 OB03G10500 PAIR1 (LOC_Os03g01590) ORGLA03G0002700 OsI_09648 (BGIOSGA011612) OB03G10470 SB01G050260 (Sb01g050260) GRMZM2G458423 Si038664m.g LOC_Os03g01580 ORGLA03G0002600 OS03G0106200 (BGIOSGA011613) OB03G10440 SB01G050270 (Sb01g050270) Si034173m.g LOC_Os03g01740 ORGLA03G0003900 OS03G0107700 (BGIOSGA011675) OsI_09665 (BGIOSGA011677) OB03G10590 SB01G050130 (Sb01g050130) Si039635m.g LOC_Os03g01614 LOC_Os03g01750 ORGLA03G0004000 OsI_09663 (BGIOSGA011604) OS03G0107800 (BGIOSGA011603) OB03G10600 Sb01g050120 GRMZM2G052546 Si035550m.g LOC_Os03g01730 ORGLA03G0003800 OJ1384D03.4 (BGIOSGA011674) OsI_09664 (BGIOSGA011676) OB03G10570 LOC_Os03g01570 ORGLA03G0002400 OSJNBA0009C08.12 (BGIOSGA011614) OB03G10420 SB01G050290 (Sb01g050290) GRMZM2G114469 Si035956m.g LOC_Os03g01630 OsI_09652 (BGIOSGA011609) OsI_09653 (BGIOSGA011608) LOC_Os03g01530 ORGLA03G0002100 OS03G0105600 (BGIOSGA011667) TUBB1 (GRMZM2G164696) Si039761m.g OB03G10390 LOC_Os03g01600 ORGLA03G0002800 OSJNBA0009C08.14 (BGIOSGA011611) OB03G10480 Sb01g050250 Si036293m.g Si035973m.g LOC_Os03g01790 ORGLA03G0004300 OJ1384D03.9 (BGIOSGA011680) OB03G10650 SB01G050080 (Sb01g050080) GRMZM2G085691 Si034810m.g OB03G10640 SB01G050085 (Sb01g050085) SB01G050097 (Sb01g050097) LOC_Os03g01720 ORGLA03G0003700 OS03G0107500 (BGIOSGA011673) OB03G10560 GRMZM2G028870 Si036488m.g LOC_Os03g01540 ORGLA03G0002200 OS03G0105700 (BGIOSGA011616) OB03G10400 Si039060m.g LOC_Os03g01640 ORGLA03G0003000 OS03G0106800 (BGIOSGA011610) EPlGT00140000000172.C.a.b.b.a.a.a.b EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.a EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.a.a.a LOC_Os03g01670 ORGLA03G0003400 EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.a EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.a SB01G050166 (Sb01g050166) GRMZM2G410990 Si034532m.g GSMUA_Achr5G22720_001 (GSMUA_Achr5G22720_001) GSMUA_Achr10G30810_001 (GSMUA_Achr10G30810_001) OsI_09657 (BGIOSGA011671) OB03G10530 EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.b.a.a LOC_Os11g29490 OsI_36138 (BGIOSGA035277) OsI_36140 (BGIOSGA035278) OS11G0485200 (BGIOSGA035279) OsI_36138 (BGIOSGA035277) OsI_36140 (BGIOSGA035278) OS11G0485200 (BGIOSGA035279) EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.b.b EPlGT00140000000172.C.a.b.b.a.a.a.b.a.a.b.a.c.b.b LOC_Os11g29750 OsI_36138 (BGIOSGA035277) OsI_36140 (BGIOSGA035278) OS11G0485200 (BGIOSGA035279) ORGLA11G0117900 GRMZM2G036938 GSMUA_Achr10G30680_001 (GSMUA_Achr10G30680_001) GSMUA_Achr4G20580_001 (GSMUA_Achr4G20580_001) GSMUA_Achr1G10350_001 (GSMUA_Achr1G10350_001) GSMUA_Achr2G04890_001 (GSMUA_Achr2G04890_001) GSMUA_Achr3G27910_001 (GSMUA_Achr3G27910_001) GSMUA_Achr4G12650_001 (GSMUA_Achr4G12650_001) EPlGT00140000000172.C.a.b.b.a.a.a.b.b EPlGT00140000000172.C.a.b.b.a.a.a.b.b EPlGT00140000000172.C.a.b.b.a.a.a.b.b EPlGT00140000000172.C.a.b.b.a.a.a.b.b LOC_Os04g56160 OSIGBA0158D24.1 (BGIOSGA017272) ORGLA04G0242400 OB04G34970 EPlGT00140000000172.C.a.b.b.a.a.a.b.b BRADI5G24690 HA1 (MLOC_75846) EPlGT00140000000172.C.a.b.b.a.a.a.b.b EPlGT00140000000172.C.a.b.b.a.a.a.b.b GRMZM2G019404 mha4 (GRMZM2G006894) SB06G031240 (Sb06g031240) Si021113m.g LOC_Os03g01620 ORGLA03G0003100 OSJNBA0009C08.16 (BGIOSGA011670) LOC_Os03g01560 OsI_09645 (BGIOSGA011668) LOC_Os03g01770 ORGLA03G0004200 CDC25.2 (BGIOSGA011602) OB03G10630 SB01G050100 (Sb01g050100) Si038007m.g LOC_Os03g01810 ORGLA03G0004500 OS03G0108400 (BGIOSGA011681) LOC_Os03g01760 ORGLA03G0004100 OS03G0107900 (BGIOSGA011678) OB03G10620 SB01G050110 (Sb01g050110) GRMZM2G035377 Si035828m.g