Reference Gene Name: PHYA (AT1G09570) EnsemblPlants
Reference Species : Arabidopsis thaliana
Root Species : Magnoliophyta 		Magnoliophyta Link Wikipedia to Arabidopsis thaliana Link Ensembl
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Magnoliophyta duplication node (click to collapse) Magnoliophyta Click to show this node (Magnoliophyta) Magnoliophyta duplication node (click to collapse) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta Click to hide this line (core eudicotyledons) core eudicotyledons speciation node (click to collapse) core eudicotyledons Click to hide this line (rosids) rosids speciation node (click to collapse) rosids Click to hide this line (Brassicaceae) Brassicaceae speciation node (click to collapse) Brassicaceae Click to hide this line (Arabidopsis) Arabidopsis speciation node (click to collapse) Arabidopsis Click to hide this line (Arabidopsis thaliana) Arabidopsis thaliana terminal node Arabidopsis thaliana - Chr:1 Click to hide this line (Arabidopsis lyrata subsp. lyrata) Arabidopsis lyrata subsp. lyrata terminal node Arabidopsis lyrata subsp. lyrata - Chr:1 G6PD4 (fgenesh2_kg.1__988__AT1G09420.1) fgenesh2_kg.1__1025__AT1G09700.1 Click to show this node (Brassica rapa subsp. pekinensis) Brassica rapa subsp. pekinensis duplication node (click to collapse) Click to hide this line (Brassica rapa subsp. pekinensis) Brassica rapa subsp. pekinensis terminal node Brassica rapa subsp. pekinensis - Chr:A06 Bra020028 (Bra020028) Bra020027 (Bra020027) Bra020026 (Bra020026) Bra020025 (Bra020025) Bra020012 (Bra020012) Bra019999 (Bra019999) Bra019998 (Bra019998) Click to hide this line (Brassica rapa subsp. pekinensis) Brassica rapa subsp. pekinensis terminal node Brassica rapa subsp. pekinensis - Chr:A09 Bra031687 (Bra031687) Bra031686 (Bra031686) Bra031685 (Bra031685) Bra031684 (Bra031684) Bra031683 (Bra031683) Bra031681 (Bra031681) Bra031680 (Bra031680) Bra031679 (Bra031679) Bra031677 (Bra031677) Bra031670 (Bra031670) Bra031664 (Bra031664) Bra031663 (Bra031663) Bra031662 (Bra031662) Bra031661 (Bra031661) Bra031660 (Bra031660) Bra031659 (Bra031659) Bra031658 (Bra031658) Bra031657 (Bra031657) Click to hide this line (fabids) fabids speciation node (click to collapse) fabids Click to show this node (Papilionoideae) Papilionoideae duplication node (click to collapse) Click to hide this line (Papilionoideae) Papilionoideae speciation node (click to collapse) Papilionoideae Click to show this node (Glycine max) Glycine max duplication node (click to collapse) Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm20 GLYMA20G21970 GLYMA20G21983 GLYMA20G21996 GLYMA20G22010 GLYMA20G22020 GLYMA20G22030 GLYMA20G22040 GLYMA20G22050 GLYMA20G22070 GLYMA20G22090 GLYMA20G22110 GLYMA20G22120 GLYMA20G22130 GLYMA20G22140 GLYMA20G22150 GLYMA20G22170 FEN1 (GLYMA20G22190) GLYMA20G22200 GLYMA20G22240 GLYMA20G22255 GLYMA20G22270 GLYMA20G22311 GLYMA20G22331 GLYMA20G22351 GLYMA20G22370 GLYMA20G22380 Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm10 GLYMA10G28030 GLYMA10G28035 GLYMA10G28040 GLYMA10G28051 GLYMA10G28060 GLYMA10G28070 GLYMA10G28075 GLYMA10G28080 GLYMA10G28091 GLYMA10G28100 GLYMA10G28110 GLYMA10G28130 GLYMA10G28140 GLYMA10G28150 GLYMA10G28180 FEN1 (GLYMA10G28200) GLYMA10G28211 GLYMA10G28220 GLYMA10G28240 GLYMA10G28265 GLYMA10G28260 GLYMA10G28270 GLYMA10G28300 GLYMA10G28310 GLYMA10G28320 Click to hide this line (Medicago truncatula) Medicago truncatula terminal node Medicago truncatula - Chr:1 MTR_1g085010 MTR_1g085020 MTR_1g085030 MTR_1g085050 MTR_1g085060 MTR_1g085080 MTR_1g085090 MTR_1g085100 MTR_1g085110 MTR_1g085120 FEN1 (MTR_1g085130) MTR_1g085150 MTR_1g085170 MTR_1g085180 MTR_1g085190 MTR_1g085210 MTR_1g085220 MTR_1g085230 MTR_1g085240 MTR_1g085250 MTR_1g085260 MTR_1g085270 MTR_1g085280 MTR_1g085300 MTR_1g085310 MTR_1g085320 MTR_1g085350 Click to show this node (Papilionoideae) Papilionoideae speciation node (click to collapse) Click to show this node (Glycine max) Glycine max duplication node (click to collapse) Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm19 GLYMA19G41060 GLYMA19G41080 GLYMA19G41090 GLYMA19G41100 GLYMA19G41111 GLYMA19G41120 GLYMA19G41130 GLYMA19G41141 GLYMA19G41150 GLYMA19G41160 GLYMA19G41171 GLYMA19G41181 GLYMA19G41190 GLYMA19G41200 GLYMA19G41230 GLYMA19G41270 GLYMA19G41275 GLYMA19G41280 GLYMA19G41287 GLYMA19G41294 GLYMA19G41302 GLYMA19G41310 SOYAP2 (GLYMA19G41320) GLYMA19G41330 GLYMA19G41350 Click to hide this line (Glycine max) Glycine max terminal node Glycine max - Chr:Gm03 GLYMA03G38460 GLYMA03G38480 GLYMA03G38490 GLYMA03G38500 GLYMA03G38510 GLYMA03G38520 GLYMA03G38530 GLYMA03G38540 GLYMA03G38550 GLYMA03G38560 GLYMA03G38570 GLYMA03G38581 GLYMA03G38591 GLYMA03G38600 GLYMA03G38610 GLYMA03G38640 GLYMA03G38690 GLYMA03G38701 GLYMA03G38711 GLYMA03G38720 GLYMA03G38730 GLYMA03G38740 GLYMA03G38750 GLYMA03G38760 Click to hide this line (Populus trichocarpa) Populus trichocarpa terminal node Populus trichocarpa - Chr:13 POPTRDRAFT_662504 (POPTR_0013s00200) POPTRDRAFT_570638 (POPTR_0013s00210) POPTRDRAFT_240151 (POPTR_0013s00230) POPTRDRAFT_823553 (POPTR_0013s00250) POPTR_0013s00260 POPTR_0013s00270 POPTRDRAFT_570648 (POPTR_0013s00300) XM_002319416.1 (POPTR_0013s00320) POPTR_0013s00330 POPTRDRAFT_570651 (POPTR_0013s00340) POPTRDRAFT_240188 (POPTR_0013s00350) POPTRDRAFT_570653 (POPTR_0013s00360) POPTRDRAFT_570654 (POPTR_0013s00370) Click to hide this line (Vitis vinifera) Vitis vinifera terminal node Vitis vinifera - Chr:14 VIT_14s0060g00010 VIT_14s0060g00040 VIT_14s0060g00050 VIT_14s0060g00060 VIT_14s0060g00070 VIT_14s0060g00080 VIT_14s0060g00090 VIT_14s0060g00110 VIT_14s0060g00150 VIT_14s0060g00160 VIT_14s0060g00170 FEN1 (VIT_14s0060g00200) FEN1 (VIT_14s0060g00210) VIT_14s0060g00220 VIT_14s0060g00250 VIT_14s0060g00270 VIT_14s0060g00280 VIT_14s0060g00290 Click to hide this line (Solanum) Solanum speciation node (click to collapse) Solanum Click to hide this line (Solanum lycopersicum) Solanum lycopersicum terminal node Solanum lycopersicum - Chr:10 Solyc10g044490.1 Solyc10g044500.1 Solyc10g044510.1 SEND33 (Solyc10g044520.1) Solyc10g044530.1 Solyc10g044540.1 Solyc10g044550.1 Solyc10g044560.1 Solyc10g044580.1 Solyc10g044600.1 Solyc10g044610.1 Solyc10g044620.1 Solyc10g044630.1 Solyc10g044640.1 Solyc10g044660.1 Solyc10g044690.1 Solyc10g044700.1 Solyc10g044710.1 Solyc10g044720.1 Solyc10g044730.1 Solyc10g044740.1 Solyc10g044750.1 Solyc10g044770.1 Solyc10g044780.1 Solyc10g044790.1 Solyc10g044800.1 Solyc10g044810.1 Solyc10g044820.1 Solyc10g044830.1 Click to hide this line (Solanum tuberosum) Solanum tuberosum terminal node Solanum tuberosum - Chr:10 PGSC0003DMG400009752 (PGSC0003DMG400009752) PGSC0003DMG400009754 (PGSC0003DMG400009754) PGSC0003DMG400009753 (PGSC0003DMG400009753) PGSC0003DMG400044702 (PGSC0003DMG400044702) PGSC0003DMG400018974 (PGSC0003DMG400018974) PGSC0003DMG400018975 (PGSC0003DMG400018975) PGSC0003DMG400018978 (PGSC0003DMG400018978) PGSC0003DMG400044506 (PGSC0003DMG400044506) PGSC0003DMG400046613 (PGSC0003DMG400046613) PGSC0003DMG400018977 (PGSC0003DMG400018977) PGSC0003DMG400047089 (PGSC0003DMG400047089) PGSC0003DMG400042286 (PGSC0003DMG400042286) PGSC0003DMG400046994 (PGSC0003DMG400046994) PGSC0003DMG400044675 (PGSC0003DMG400044675) PGSC0003DMG400036134 (PGSC0003DMG400036134) PGSC0003DMG400039246 (PGSC0003DMG400039246) PGSC0003DMG400040719 (PGSC0003DMG400040719) PGSC0003DMG400004327 (PGSC0003DMG400004327) PGSC0003DMG400004326 (PGSC0003DMG400004326) PGSC0003DMG400036106 (PGSC0003DMG400036106) PGSC0003DMG400037003 (PGSC0003DMG400037003) PGSC0003DMG400040476 (PGSC0003DMG400040476) PGSC0003DMG400040181 (PGSC0003DMG400040181) PGSC0003DMG400004325 (PGSC0003DMG400004325) PGSC0003DMG400004329 (PGSC0003DMG400004329) PGSC0003DMG400004324 (PGSC0003DMG400004324) PGSC0003DMG400004328 (PGSC0003DMG400004328) PGSC0003DMG400046320 (PGSC0003DMG400046320) PGSC0003DMG400011765 (PGSC0003DMG400011765) Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to show this node (commelinids) commelinids duplication node (click to collapse) Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to show this node (Poaceae) Poaceae duplication node (click to collapse) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae Click to hide this line (BEP clade) BEP clade speciation node (click to collapse) BEP clade Click to hide this line (Pooideae) Pooideae speciation node (click to collapse) Pooideae Click to show this node (Brachypodium distachyon) Brachypodium distachyon duplication node (click to collapse) Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:1 BRADI1G10370 BRADI1G10380 BRADI1G10390 BRADI1G10400 BRADI1G10410 BRADI1G10420 BRADI1G10430 BRADI1G10440 BRADI1G10447 BRADI1G10460 BRADI1G10470 BRADI1G10480 BRADI1G10490 BRADI1G10500 BRADI1G10530 BRADI1G10540 BRADI1G10550 BRADI1G10560 BRADI1G10567 BRADI1G10580 BRADI1G10590 BRADI1G10600 BRADI1G10610 BRADI1G10620 BRADI1G10630 BRADI1G10640 BRADI1G10650 BRADI1G10660 BRADI1G10670 Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:1 BRADI1G10360 BRADI1G10370 BRADI1G10380 BRADI1G10390 BRADI1G10400 BRADI1G10410 BRADI1G10420 BRADI1G10430 BRADI1G10440 BRADI1G10447 BRADI1G10460 BRADI1G10470 BRADI1G10480 BRADI1G10490 BRADI1G10500 BRADI1G10530 BRADI1G10540 BRADI1G10550 BRADI1G10560 BRADI1G10567 BRADI1G10580 BRADI1G10590 BRADI1G10600 BRADI1G10610 BRADI1G10620 BRADI1G10630 BRADI1G10640 BRADI1G10650 BRADI1G10660 Click to hide this line (Hordeum vulgare subsp. vulgare) Hordeum vulgare subsp. vulgare terminal node Hordeum vulgare subsp. vulgare - Chr:4 MLOC_81970 MLOC_36451 MLOC_52920 MLOC_10389 MLOC_54877 MLOC_72842 MLOC_75143 MLOC_13289 MLOC_74741 MLOC_72162 MLOC_21478 MLOC_36949 MLOC_70989 MLOC_70988 MLOC_55034 MLOC_44256 MLOC_59158 MLOC_59159 MLOC_66880 MLOC_68493 MLOC_68494 MLOC_63737 MLOC_63735 MLOC_63736 MLOC_70444 MLOC_64735 MLOC_57872 MLOC_70277 MLOC_74226 MLOC_57218 Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:3 LOC_Os03g50850 LOC_Os03g50860 LOC_Os03g50870 LOC_Os03g50880 LOC_Os03g50885 LOC_Os03g50900 LOC_Os03g50920 LOC_Os03g50940 LOC_Os03g50960 LOC_Os03g50970 LOC_Os03g50980 LOC_Os03g50990 LOC_Os03g51000 LOC_Os03g51010 LOC_Os03g51020 LOC_Os03g51040 LOC_Os03g51050 LOC_Os03g51060 LOC_Os03g51080 LOC_Os03g51090 LOC_Os03g51100 LOC_Os03g51110 LOC_Os03g51120 LOC_Os03g51140 LOC_Os03g51150 LOC_Os03g51160 LOC_Os03g51170 LOC_Os03g51180 LOC_Os03g51190 LOC_Os03g51200 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:3 BGIOSGA009914 ACT1 (BGIOSGA013463) BGIOSGA009913 BGIOSGA013464 BGIOSGA009912 BGIOSGA009911 BGIOSGA013465 BGIOSGA009910 BGIOSGA013466 BGIOSGA013467 BGIOSGA009909 BGIOSGA009908 BGIOSGA013468 BGIOSGA013469 BGIOSGA009907 BGIOSGA009905 BGIOSGA009904 BGIOSGA009903 BGIOSGA013470 BGIOSGA013471 BGIOSGA013472 BGIOSGA009902 BGIOSGA013473 BGIOSGA009901 BGIOSGA009900 BGIOSGA013474 BGIOSGA009899 BGIOSGA013475 BGIOSGA013476 BGIOSGA009898 Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:Oglab03_unplaced058 ORGLA03G0408600 ORGLA03G0408700 ORGLA03G0408800 ORGLA03G0408900 ORGLA03G0409000 ORGLA03G0409100 ORGLA03G0409200 ORGLA03G0409300 ORGLA03G0409400 ORGLA03G0409500 ORGLA03G0409600 ORGLA03G0409700 ORGLA03G0409800 ORGLA03G0409900 ORGLA03G0410000 ORGLA03G0410200 ORGLA03G0410300 ORGLA03G0410400 ORGLA03G0410500 ORGLA03G0410600 ORGLA03G0410700 ORGLA03G0410800 ORGLA03G0410900 ORGLA03G0411000 ORGLA03G0411100 ORGLA03G0411200 ORGLA03G0411300 ORGLA03G0411400 ORGLA03G0411500 ORGLA03G0411600 Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:3 OB03G39070 (OB03G39070) OB03G39080 (OB03G39080) OB03G39090 (OB03G39090) OB03G39100 (OB03G39100) OB03G39110 (OB03G39110) OB03G39120 (OB03G39120) OB03G39130 (OB03G39130) OB03G39140 (OB03G39140) OB03G39150 (OB03G39150) OB03G39160 (OB03G39160) OB03G39170 (OB03G39170) OB03G39180 (OB03G39180) OB03G39190 (OB03G39190) OB03G39200 (OB03G39200) OB03G39210 (OB03G39210) OB03G39230 (OB03G39230) OB03G39240 (OB03G39240) OB03G39250 (OB03G39250) OB03G39260 (OB03G39260) OB03G39270 (OB03G39270) OB03G39280 (OB03G39280) OB03G39290 (OB03G39290) OB03G39300 (OB03G39300) OB03G39310 (OB03G39310) OB03G39320 (OB03G39320) OB03G39330 (OB03G39330) OB03G39340 (OB03G39340) OB03G39350 (OB03G39350) OB03G39360 (OB03G39360) OB03G39370 (OB03G39370) Click to hide this line (Panicoideae) Panicoideae speciation node (click to collapse) Panicoideae Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:5 GRMZM5G896650 GRMZM2G096591 GRMZM5G897022 GRMZM5G878347 GRMZM2G046055 GRMZM2G046050 GRMZM2G045955 AC216052.3_FG008 GRMZM2G045941 GRMZM2G045690 AC216052.3_FG004 GRMZM2G093139 GRMZM2G181000 GRMZM2G181002 GRMZM5G813740 GRMZM2G481305 GRMZM5G829476 GRMZM2G455869 GRMZM2G455874 GRMZM2G425236 GRMZM2G152328 GRMZM2G152548 GRMZM5G833140 GRMZM2G459543 AC209072.3_FG001 GRMZM2G131080 GRMZM2G158359 GRMZM2G408897 GRMZM5G859049 AC209072.3_FG011 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 ZMHK1B1' (GRMZM2G155767) GRMZM2G046849 GRMZM2G046966 GRMZM2G511542 GRMZM2G348349 GRMZM2G047055 GRMZM2G423423 GRMZM2G059981 GRMZM2G059964 GRMZM2G359929 GRMZM2G518427 GRMZM2G073912 GRMZM5G863645 GRMZM5G865188 GRMZM2G015073 GRMZM5G867390 GRMZM2G050081 GRMZM5G862643 GRMZM5G813124 GRMZM2G349035 GRMZM2G583462 GRMZM5G826838 GRMZM5G848720 GRMZM5G825695 GRMZM2G423634 GRMZM2G556330 AC231640.1_FG009 GRMZM2G412814 GRMZM2G412793 GRMZM5G809482 Click to show this node (Sorghum bicolor) Sorghum bicolor duplication node (click to collapse) Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G009810 (Sb01g009810) SB01G009820 (Sb01g009820) SB01G009830 (Sb01g009830) SB01G009835 (Sb01g009835) SB01G009840 (Sb01g009840) SB01G009850 (Sb01g009850) SB01G009860 (Sb01g009860) SB01G009863 (Sb01g009863) SB01G009866 (Sb01g009866) SB01G009870 (Sb01g009870) SB01G009880 (Sb01g009880) SB01G009890 (Sb01g009890) SB01G009900 (Sb01g009900) SB01G009910 (Sb01g009910) SB01G009933 (Sb01g009933) SB01G009936 (Sb01g009936) SB01G009940 (Sb01g009940) SB01G009950 (Sb01g009950) SB01G009960 (Sb01g009960) SB01G009965 (Sb01g009965) SB01G009970 (Sb01g009970) SB01G009980 (Sb01g009980) SB01G009990 (Sb01g009990) SB01G009995 (Sb01g009995) SB01G010000 (Sb01g010000) SB01G010010 (Sb01g010010) SB01G010020 (Sb01g010020) SB01G010025 (Sb01g010025) AC1 (Sb01g010030) Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G009800 (Sb01g009800) SB01G009810 (Sb01g009810) SB01G009820 (Sb01g009820) SB01G009830 (Sb01g009830) SB01G009835 (Sb01g009835) SB01G009840 (Sb01g009840) SB01G009850 (Sb01g009850) SB01G009860 (Sb01g009860) SB01G009863 (Sb01g009863) SB01G009866 (Sb01g009866) SB01G009870 (Sb01g009870) SB01G009880 (Sb01g009880) SB01G009890 (Sb01g009890) SB01G009900 (Sb01g009900) SB01G009910 (Sb01g009910) SB01G009933 (Sb01g009933) SB01G009936 (Sb01g009936) SB01G009940 (Sb01g009940) SB01G009950 (Sb01g009950) SB01G009960 (Sb01g009960) SB01G009965 (Sb01g009965) SB01G009970 (Sb01g009970) SB01G009980 (Sb01g009980) SB01G009990 (Sb01g009990) SB01G009995 (Sb01g009995) SB01G010000 (Sb01g010000) SB01G010010 (Sb01g010010) SB01G010020 (Sb01g010020) SB01G010025 (Sb01g010025) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_9 SI035411M.G (Si035411m.g) SI035791M.G (Si035791m.g) SI034255M.G (Si034255m.g) SI034136M.G (Si034136m.g) SI039561M.G (Si039561m.g) SI037973M.G (Si037973m.g) SI039354M.G (Si039354m.g) SI036818M.G (Si036818m.g) SI040744M.G (Si040744m.g) SI034811M.G (Si034811m.g) SI039987M.G (Si039987m.g) SI037256M.G (Si037256m.g) SI036070M.G (Si036070m.g) SI034833M.G (Si034833m.g) SI036340M.G (Si036340m.g) SI040351M.G (Si040351m.g) SI038786M.G (Si038786m.g) SI038436M.G (Si038436m.g) SI040517M.G (Si040517m.g) SI033999M.G (Si033999m.g) SI036077M.G (Si036077m.g) SI034805M.G (Si034805m.g) SI038211M.G (Si038211m.g) SI035144M.G (Si035144m.g) SI040754M.G (Si040754m.g) SI034686M.G (Si034686m.g) SI038564M.G (Si038564m.g) SI036975M.G (Si036975m.g) SI040760M.G (Si040760m.g) SI036200M.G (Si036200m.g) Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_8 SI026652M.G (Si026652m.g) SI027812M.G (Si027812m.g) SI027906M.G (Si027906m.g) SI027575M.G (Si027575m.g) SI026986M.G (Si026986m.g) SI027223M.G (Si027223m.g) SI028634M.G (Si028634m.g) SI026646M.G (Si026646m.g) SI026572M.G (Si026572m.g) SI028136M.G (Si028136m.g) SI026570M.G (Si026570m.g) SI026470M.G (Si026470m.g) SI028167M.G (Si028167m.g) SI025907M.G (Si025907m.g) SI028279M.G (Si028279m.g) SI027060M.G (Si027060m.g) SI025997M.G (Si025997m.g) SI028592M.G (Si028592m.g) SI027974M.G (Si027974m.g) SI025900M.G (Si025900m.g) SI028139M.G (Si028139m.g) SI028028M.G (Si028028m.g) SI028610M.G (Si028610m.g) SI027886M.G (Si027886m.g) SI027198M.G (Si027198m.g) SI026819M.G (Si026819m.g) SI027019M.G (Si027019m.g) SI026053M.G (Si026053m.g) SI026215M.G (Si026215m.g) SI025861M.G (Si025861m.g) Click to hide this line (commelinids) commelinids speciation node (click to collapse) commelinids Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:5 GSMUA_Achr5G27160_001 (GSMUA_Achr5G27160_001) GSMUA_Achr5G27170_001 (GSMUA_Achr5G27170_001) GSMUA_Achr5G27180_001 (GSMUA_Achr5G27180_001) GSMUA_Achr5G27190_001 (GSMUA_Achr5G27190_001) GSMUA_Achr5G27200_001 (GSMUA_Achr5G27200_001) GSMUA_Achr5G27210_001 (GSMUA_Achr5G27210_001) GSMUA_Achr5G27220_001 (GSMUA_Achr5G27220_001) GSMUA_Achr5G27230_001 (GSMUA_Achr5G27230_001) GSMUA_Achr5G27240_001 (GSMUA_Achr5G27240_001) GSMUA_Achr5G27250_001 (GSMUA_Achr5G27250_001) GSMUA_Achr5G27260_001 (GSMUA_Achr5G27260_001) GSMUA_Achr5G27270_001 (GSMUA_Achr5G27270_001) GSMUA_Achr5G27280_001 (GSMUA_Achr5G27280_001) GSMUA_Achr5G27290_001 (GSMUA_Achr5G27290_001) GSMUA_Achr5G27300_001 (GSMUA_Achr5G27300_001) GSMUA_Achr5G27320_001 (GSMUA_Achr5G27320_001) GSMUA_Achr5G27330_001 (GSMUA_Achr5G27330_001) GSMUA_Achr5G27340_001 (GSMUA_Achr5G27340_001) GSMUA_Achr5G27350_001 (GSMUA_Achr5G27350_001) GSMUA_Achr5G27360_001 (GSMUA_Achr5G27360_001) GSMUA_Achr5G27370_001 (GSMUA_Achr5G27370_001) GSMUA_Achr5G27380_001 (GSMUA_Achr5G27380_001) GSMUA_Achr5G27390_001 (GSMUA_Achr5G27390_001) GSMUA_Achr5G27400_001 (GSMUA_Achr5G27400_001) GSMUA_Achr5G27410_001 (GSMUA_Achr5G27410_001) GSMUA_Achr5G27420_001 (GSMUA_Achr5G27420_001) GSMUA_Achr5G27430_001 (GSMUA_Achr5G27430_001) GSMUA_Achr5G27440_001 (GSMUA_Achr5G27440_001) GSMUA_Achr5G27450_001 (GSMUA_Achr5G27450_001) GSMUA_Achr5G27460_001 (GSMUA_Achr5G27460_001) Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to show this node (Andropogoneae) Andropogoneae speciation node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 GRMZM2G552644 GRMZM2G417496 AC211222.2_FG001 GRMZM5G876602 GRMZM2G060943 GRMZM2G090657 AC211940.4_FG001 GRMZM2G002109 GRMZM2G002138 GRMZM2G002143 AC186525.4_FG005 BSD2 (GRMZM2G062788) AC199540.3_FG003 GRMZM2G062777 GRMZM2G088490 GRMZM2G179844 GRMZM5G832908 GRMZM2G480451 GRMZM2G129486 GRMZM2G560077 AC214634.3_FG003 GRMZM2G429807 GRMZM2G429759 GRMZM5G843186 GRMZM2G407382 AC186518.3_FG003 GRMZM2G179138 GRMZM2G179121 GRMZM2G179118 Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:8 GSMUA_Achr8G05980_001 (GSMUA_Achr8G05980_001) GSMUA_Achr8G05990_001 (GSMUA_Achr8G05990_001) GSMUA_Achr8G06000_001 (GSMUA_Achr8G06000_001) GSMUA_Achr8G06010_001 (GSMUA_Achr8G06010_001) GSMUA_Achr8G06020_001 (GSMUA_Achr8G06020_001) GSMUA_Achr8G06030_001 (GSMUA_Achr8G06030_001) GSMUA_Achr8G06040_001 (GSMUA_Achr8G06040_001) GSMUA_Achr8G06050_001 (GSMUA_Achr8G06050_001) GSMUA_Achr8G06060_001 (GSMUA_Achr8G06060_001) GSMUA_Achr8G06070_001 (GSMUA_Achr8G06070_001) GSMUA_Achr8G06080_001 (GSMUA_Achr8G06080_001) GSMUA_Achr8G06090_001 (GSMUA_Achr8G06090_001) GSMUA_Achr8G06100_001 (GSMUA_Achr8G06100_001) GSMUA_Achr8G06110_001 (GSMUA_Achr8G06110_001) GSMUA_Achr8G06120_001 (GSMUA_Achr8G06120_001) GSMUA_Achr8G06140_001 (GSMUA_Achr8G06140_001) GSMUA_Achr8G06150_001 (GSMUA_Achr8G06150_001) GSMUA_Achr8G06160_001 (GSMUA_Achr8G06160_001) GSMUA_Achr8G06170_001 (GSMUA_Achr8G06170_001) GSMUA_Achr8G06180_001 (GSMUA_Achr8G06180_001) GSMUA_Achr8G06190_001 (GSMUA_Achr8G06190_001) GSMUA_Achr8G06200_001 (GSMUA_Achr8G06200_001) GSMUA_Achr8G06220_001 (GSMUA_Achr8G06220_001) GSMUA_Achr8G06230_001 (GSMUA_Achr8G06230_001) GSMUA_Achr8G06240_001 (GSMUA_Achr8G06240_001) GSMUA_Achr8G06250_001 (GSMUA_Achr8G06250_001) GSMUA_Achr8G06260_001 (GSMUA_Achr8G06260_001) GSMUA_Achr8G06270_001 (GSMUA_Achr8G06270_001) GSMUA_Achr8G06280_001 (GSMUA_Achr8G06280_001) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta Click to show this node (commelinids) commelinids speciation node (click to collapse) Click to show this node (Poaceae) Poaceae speciation node (click to collapse) Click to show this node (Panicoideae) Panicoideae speciation node (click to collapse) Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:GL003512.1 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:8 GRMZM2G119226 GRMZM2G088112 GRMZM2G388574 AC215311.3_FG002 GRMZM2G175398 GRMZM5G859431 GRMZM2G440803 GRMZM2G440820 GRMZM2G440855 GRMZM2G424682 GRMZM2G444567 GRMZM2G148156 AC203531.3_FG002 GRMZM2G095964 GRMZM2G111898 GRMZM2G111948 GRMZM2G120536 GRMZM2G127958 GRMZM2G127972 GRMZM2G081892 GRMZM2G407273 WIP1 (GRMZM2G156632) GRMZM2G156708 GRMZM2G156713 GRMZM2G456830 GRMZM2G450206 GRMZM2G450217 GRMZM2G450228 GRMZM2G131994 CRS2 (GRMZM2G132021) Click to show this node (core eudicotyledons) core eudicotyledons speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to show this node (Brassicaceae) Brassicaceae speciation node (click to collapse) Click to hide this line (Brassica rapa subsp. pekinensis) Brassica rapa subsp. pekinensis terminal node Brassica rapa subsp. pekinensis - Chr:A03 Bra001635 (Bra001635) Bra001636 (Bra001636) Bra001637 (Bra001637) Bra001638 (Bra001638) Bra001639 (Bra001639) Bra001640 (Bra001640) Bra001641 (Bra001641) Bra001642 (Bra001642) Bra001643 (Bra001643) Bra001644 (Bra001644) Bra001645 (Bra001645) Bra001646 (Bra001646) Bra001647 (Bra001647) Bra001648 (Bra001648) Bra001649 (Bra001649) Bra001651 (Bra001651) Bra001652 (Bra001652) Bra001653 (Bra001653) Bra001654 (Bra001654) Bra001655 (Bra001655) Bra001656 (Bra001656) Bra001657 (Bra001657) Bra001658 (Bra001658) Bra001659 (Bra001659) Bra001660 (Bra001660) Bra001661 (Bra001661) Bra001662 (Bra001662) Bra001663 (Bra001663) Bra001664 (Bra001664) Bra001665 (Bra001665) Click to hide this line (Magnoliophyta) Magnoliophyta speciation node (click to collapse) Magnoliophyta Click to hide this line (commelinids) commelinids speciation node (click to collapse) commelinids Click to show this node (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis duplication node (click to collapse) Click to show this node (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis duplication node (click to collapse) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:4 GSMUA_Achr4G32800_001 (GSMUA_Achr4G32800_001) GSMUA_Achr4G32810_001 (GSMUA_Achr4G32810_001) GSMUA_Achr4G32820_001 (GSMUA_Achr4G32820_001) GSMUA_Achr4G32830_001 (GSMUA_Achr4G32830_001) GSMUA_Achr4G32840_001 (GSMUA_Achr4G32840_001) GSMUA_Achr4G32850_001 (GSMUA_Achr4G32850_001) GSMUA_Achr4G32860_001 (GSMUA_Achr4G32860_001) GSMUA_Achr4G32870_001 (GSMUA_Achr4G32870_001) GSMUA_Achr4G32880_001 (GSMUA_Achr4G32880_001) GSMUA_Achr4G32890_001 (GSMUA_Achr4G32890_001) GSMUA_Achr4G32900_001 (GSMUA_Achr4G32900_001) GSMUA_Achr4G32910_001 (GSMUA_Achr4G32910_001) GSMUA_Achr4G32920_001 (GSMUA_Achr4G32920_001) GSMUA_Achr4G32950_001 (GSMUA_Achr4G32950_001) GSMUA_Achr4G32960_001 (GSMUA_Achr4G32960_001) GSMUA_Achr4G32970_001 (GSMUA_Achr4G32970_001) GSMUA_Achr4G32980_001 (GSMUA_Achr4G32980_001) GSMUA_Achr4G32990_001 (GSMUA_Achr4G32990_001) GSMUA_Achr4G33000_001 (GSMUA_Achr4G33000_001) GSMUA_Achr4G33010_001 (GSMUA_Achr4G33010_001) GSMUA_Achr4G33020_001 (GSMUA_Achr4G33020_001) GSMUA_Achr4G33030_001 (GSMUA_Achr4G33030_001) GSMUA_Achr4G33040_001 (GSMUA_Achr4G33040_001) GSMUA_Achr4G33050_001 (GSMUA_Achr4G33050_001) GSMUA_Achr4G33060_001 (GSMUA_Achr4G33060_001) GSMUA_Achr4G33070_001 (GSMUA_Achr4G33070_001) GSMUA_Achr4G33080_001 (GSMUA_Achr4G33080_001) GSMUA_Achr4G33090_001 (GSMUA_Achr4G33090_001) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:4 GSMUA_Achr4G32780_001 (GSMUA_Achr4G32780_001) GSMUA_Achr4G32800_001 (GSMUA_Achr4G32800_001) GSMUA_Achr4G32810_001 (GSMUA_Achr4G32810_001) GSMUA_Achr4G32820_001 (GSMUA_Achr4G32820_001) GSMUA_Achr4G32830_001 (GSMUA_Achr4G32830_001) GSMUA_Achr4G32840_001 (GSMUA_Achr4G32840_001) GSMUA_Achr4G32850_001 (GSMUA_Achr4G32850_001) GSMUA_Achr4G32860_001 (GSMUA_Achr4G32860_001) GSMUA_Achr4G32870_001 (GSMUA_Achr4G32870_001) GSMUA_Achr4G32880_001 (GSMUA_Achr4G32880_001) GSMUA_Achr4G32890_001 (GSMUA_Achr4G32890_001) GSMUA_Achr4G32900_001 (GSMUA_Achr4G32900_001) GSMUA_Achr4G32910_001 (GSMUA_Achr4G32910_001) GSMUA_Achr4G32920_001 (GSMUA_Achr4G32920_001) GSMUA_Achr4G32950_001 (GSMUA_Achr4G32950_001) GSMUA_Achr4G32960_001 (GSMUA_Achr4G32960_001) GSMUA_Achr4G32970_001 (GSMUA_Achr4G32970_001) GSMUA_Achr4G32980_001 (GSMUA_Achr4G32980_001) GSMUA_Achr4G32990_001 (GSMUA_Achr4G32990_001) GSMUA_Achr4G33000_001 (GSMUA_Achr4G33000_001) GSMUA_Achr4G33010_001 (GSMUA_Achr4G33010_001) GSMUA_Achr4G33020_001 (GSMUA_Achr4G33020_001) GSMUA_Achr4G33030_001 (GSMUA_Achr4G33030_001) GSMUA_Achr4G33040_001 (GSMUA_Achr4G33040_001) GSMUA_Achr4G33050_001 (GSMUA_Achr4G33050_001) GSMUA_Achr4G33060_001 (GSMUA_Achr4G33060_001) GSMUA_Achr4G33070_001 (GSMUA_Achr4G33070_001) GSMUA_Achr4G33080_001 (GSMUA_Achr4G33080_001) Click to hide this line (Musa acuminata subsp. malaccensis) Musa acuminata subsp. malaccensis terminal node Musa acuminata subsp. malaccensis - Chr:6 GSMUA_Achr6G00010_001 (GSMUA_Achr6G00010_001) GSMUA_Achr6G00020_001 (GSMUA_Achr6G00020_001) GSMUA_Achr6G00030_001 (GSMUA_Achr6G00030_001) GSMUA_Achr6G00040_001 (GSMUA_Achr6G00040_001) GSMUA_Achr6G00050_001 (GSMUA_Achr6G00050_001) GSMUA_Achr6G00060_001 (GSMUA_Achr6G00060_001) GSMUA_Achr6G00070_001 (GSMUA_Achr6G00070_001) GSMUA_Achr6G00090_001 (GSMUA_Achr6G00090_001) GSMUA_Achr6G00100_001 (GSMUA_Achr6G00100_001) GSMUA_Achr6G00110_001 (GSMUA_Achr6G00110_001) GSMUA_Achr6G00120_001 (GSMUA_Achr6G00120_001) GSMUA_Achr6G00130_001 (GSMUA_Achr6G00130_001) GSMUA_Achr6G00140_001 (GSMUA_Achr6G00140_001) GSMUA_Achr6G00150_001 (GSMUA_Achr6G00150_001) GSMUA_Achr6G00160_001 (GSMUA_Achr6G00160_001) GSMUA_Achr6G00170_001 (GSMUA_Achr6G00170_001) GSMUA_Achr6G00180_001 (GSMUA_Achr6G00180_001) GSMUA_Achr6G00190_001 (GSMUA_Achr6G00190_001) GSMUA_Achr6G00200_001 (GSMUA_Achr6G00200_001) GSMUA_Achr6G00210_001 (GSMUA_Achr6G00210_001) GSMUA_Achr6G00230_001 (GSMUA_Achr6G00230_001) Click to hide this line (Poaceae) Poaceae speciation node (click to collapse) Poaceae Click to hide this line (BEP clade) BEP clade speciation node (click to collapse) BEP clade Click to hide this line (Pooideae) Pooideae speciation node (click to collapse) Pooideae Click to hide this line (Brachypodium distachyon) Brachypodium distachyon terminal node Brachypodium distachyon - Chr:1 BRADI1G08270 BRADI1G08280 BRADI1G08287 BRADI1G08294 BRADI1G08301 BRADI1G08310 BRADI1G08320 BRADI1G08326 BRADI1G08332 FUL1 (BRADI1G08340) BRADI1G08350 BRADI1G08357 BRADI1G08370 BRADI1G08380 BRADI1G08390 BRADI1G08410 BRADI1G08420 BRADI1G08430 BRADI1G08440 BRADI1G08450 BRADI1G08460 BRADI1G08470 BRADI1G08480 BRADI1G08490 BRADI1G08500 BRADI1G08510 BRADI1G08517 BRADI1G08530 BRADI1G08540 BRADI1G08550 Click to hide this line (Hordeum vulgare subsp. vulgare) Hordeum vulgare subsp. vulgare terminal node Hordeum vulgare subsp. vulgare - Chr:5 MLOC_34938 MLOC_53865 MLOC_18612 MLOC_1852 MLOC_59942 MLOC_59943 MLOC_27721 MLOC_64192 MLOC_56792 MLOC_56793 MLOC_57500 MLOC_64157 MLOC_54479 PCS2 (MLOC_55526) MLOC_55528 MLOC_54983 MLOC_57253 MLOC_16478 MLOC_54815 MLOC_5287 STK (MLOC_12295) PHO1 (MLOC_71287) MLOC_38381 MLOC_73266 MLOC_70960 MLOC_67511 MLOC_10398 MLOC_52881 CNGC2 (MLOC_4665) Click to hide this line (Oryza) Oryza speciation node (click to collapse) Oryza Click to hide this line (Oryza sativa) Oryza sativa speciation node (click to collapse) Oryza sativa Click to hide this line (Oryza sativa Japonica Group) Oryza sativa Japonica Group terminal node Oryza sativa Japonica Group - Chr:3 LOC_Os03g53930 LOC_Os03g53939 LOC_Os03g53950 LOC_Os03g53960 LOC_Os03g53970 LOC_Os03g53980 LOC_Os03g53990 LOC_Os03g54000 LOC_Os03g54010 LOC_Os03g54020 LOC_Os03g54030 LOC_Os03g54040 LOC_Os03g54050 LOC_Os03g54063 LOC_Os03g54070 LOC_Os03g54091 LOC_Os03g54100 LOC_Os03g54114 LOC_Os03g54130 LOC_Os03g54150 LOC_Os03g54160 LOC_Os03g54170 LOC_Os03g54180 LOC_Os03g54190 LOC_Os03g54200 LOC_Os03g54210 LOC_Os03g54220 LOC_Os03g54230 LOC_Os03g54240 LOC_Os03g54244 Click to hide this line (Oryza sativa Indica Group) Oryza sativa Indica Group terminal node Oryza sativa Indica Group - Chr:3 BGIOSGA013563 BGIOSGA009807 BGIOSGA013564 BGIOSGA009806 BGIOSGA009805 BGIOSGA013565 BGIOSGA013566 BGIOSGA009804 BGIOSGA009803 BGIOSGA009802 BGIOSGA013567 BGIOSGA013568 BGIOSGA009801 BGIOSGA013569 BGIOSGA013570 SPO11-1 (BGIOSGA013572) BGIOSGA009800 BGIOSGA009799 BGIOSGA013573 BGIOSGA013574 BGIOSGA013575 MADS14 (BGIOSGA009798) BGIOSGA009797 BGIOSGA013576 BGIOSGA009796 BGIOSGA009795 BGIOSGA009794 BGIOSGA009793 BGIOSGA009792 BGIOSGA009791 Click to hide this line (Oryza glaberrima) Oryza glaberrima terminal node Oryza glaberrima - Chr:3 ORGLA03G0312800 ORGLA03G0312900 ORGLA03G0313000 ORGLA03G0313100 ORGLA03G0313200 ORGLA03G0313300 ORGLA03G0313400 ORGLA03G0313500 ORGLA03G0313600 ORGLA03G0313700 ORGLA03G0313800 ORGLA03G0313900 ORGLA03G0314000 ORGLA03G0314100 ORGLA03G0314200 ORGLA03G0314400 ORGLA03G0314500 ORGLA03G0314600 ORGLA03G0314700 ORGLA03G0314800 ORGLA03G0314900 ORGLA03G0315000 ORGLA03G0315100 ORGLA03G0315200 ORGLA03G0315300 ORGLA03G0315400 ORGLA03G0315500 ORGLA03G0315600 ORGLA03G0315700 ORGLA03G0315800 Click to hide this line (Oryza brachyantha) Oryza brachyantha terminal node Oryza brachyantha - Chr:3 OB03G41270 (OB03G41270) OB03G41280 (OB03G41280) OB03G41290 (OB03G41290) OB03G41300 (OB03G41300) OB03G41310 (OB03G41310) OB03G41320 (OB03G41320) OB03G41330 (OB03G41330) OB03G41340 (OB03G41340) OB03G41350 (OB03G41350) OB03G41360 (OB03G41360) OB03G41380 (OB03G41380) OB03G41390 (OB03G41390) OB03G41400 (OB03G41400) OB03G41410 (OB03G41410) OB03G41430 (OB03G41430) OB03G41440 (OB03G41440) OB03G41450 (OB03G41450) OB03G41460 OB03G41470 (OB03G41470) OB03G41480 (OB03G41480) OB03G41490 (OB03G41490) OB03G41500 (OB03G41500) OB03G41510 (OB03G41510) OB03G41520 (OB03G41520) OB03G41530 (OB03G41530) OB03G41540 (OB03G41540) OB03G41550 (OB03G41550) OB03G41560 (OB03G41560) OB03G41570 (OB03G41570) Click to hide this line (Panicoideae) Panicoideae speciation node (click to collapse) Panicoideae Click to hide this line (Andropogoneae) Andropogoneae speciation node (click to collapse) Andropogoneae Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:2 GRMZM5G887364 GRMZM5G867802 GRMZM5G851531 GRMZM2G494478 GRMZM2G014400 GRMZM2G112954 GRMZM5G835362 GRMZM2G034927 GRMZM2G034764 GRMZM5G862554 GRMZM2G113848 AC206322.3_FG001 GRMZM2G403800 GRMZM2G105207 GRMZM2G105302 GRMZM2G351417 GRMZM2G003933 GRMZM5G881349 GRMZM2G003937 GRMZM2G129575 GRMZM2G454377 GRMZM2G454474 GRMZM2G454483 GRMZM2G575305 GRMZM2G321142 GRMZM2G021151 GRMZM2G019060 GRMZM2G028905 GRMZM5G808394 GRMZM2G090233 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:7 AC199396.4_FG008 GRMZM2G095806 GRMZM2G472869 GRMZM2G148892 GRMZM2G148864 GRMZM2G450069 GRMZM2G162086 GRMZM2G162082 GRMZM2G162893 GRMZM2G015520 AC203770.3_FG004 GRMZM2G393455 GRMZM2G092131 GRMZM2G162167 GRMZM5G851999 GRMZM2G171884 GRMZM2G171871 AC216042.3_FG006 GRMZM5G815377 GRMZM2G357040 AC216042.3_FG004 GRMZM2G058208 GRMZM2G058173 URM1 (GRMZM2G179689) GRMZM2G046177 GRMZM2G046186 GRMZM5G829293 AC225348.3_FG002 GRF10C (GRMZM2G096709) GRMZM2G096824 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:5 GRMZM2G072231 GRMZM5G883008 AC197034.3_FG010 GRMZM2G072071 GRMZM5G875251 GRMZM5G832630 GRMZM2G371942 BK2L4 (GRMZM2G071970) GRMZM2G071917 GRMZM2G071745 M31 (GRMZM2G071620) M15 (GRMZM2G553379) GRMZM2G130065 GRMZM2G130053 GRMZM2G129913 AC191434.3_FG004 GRMZM2G129865 GRMZM2G432176 HXA103 (GRMZM2G129817) AC185628.3_FG010 TLK2 (GRMZM2G172132) GRMZM2G172043 GRMZM5G824862 GLA3 (GRMZM2G473711) GRMZM2G473697 GRMZM5G894145 GRMZM2G172011 GRMZM2G171998 GRMZM2G171987 GRMZM5G886820 Click to show this node (Zea mays) Zea mays duplication node (click to collapse) Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:8 LCYE (GRMZM2G012966) GRMZM2G318121 GRMZM2G165454 GRMZM2G165428 GRMZM2G463133 GRMZM2G142987 AC196426.3_FG008 AC196426.3_FG007 GRMZM2G096655 AC201807.3_FG003 GRMZM2G539705 GRMZM2G395771 GRMZM2G096764 GRMZM2G050553 GRMZM2G027333 GRMZM2G501124 AC204393.3_FG005 AC204393.3_FG006 GRMZM2G144239 ZMGR2B (GRMZM2G142705) GRMZM2G114878 GRMZM2G114895 GRMZM2G420119 AC187087.4_FG003 GRMZM2G046037 AC187087.4_FG001 GRMZM5G898394 GRMZM2G054900 GRMZM2G054876 GRMZM5G836325 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:7 GRMZM5G822679 GRMZM2G523818 GRMZM2G369277 GRMZM2G369284 GRMZM2G068006 GRMZM2G068008 GRMZM2G470010 GRMZM2G145654 GRMZM2G145633 GRMZM2G350205 GRMZM5G891809 GRMZM2G044060 GRMZM2G044174 AC204845.3_FG008 PSK1 (GRMZM2G044194) GRMZM2G509794 GRMZM2G438652 GRMZM2G006071 GRMZM2G008234 GRMZM2G008061 GRMZM2G007936 GRMZM2G456997 GRMZM2G457001 AC209793.3_FG003 GRMZM5G898390 GRMZM5G858923 GRMZM2G437187 AC195399.3_FG004 PR-1 (GRMZM2G465226) GRMZM2G165108 Click to hide this line (Zea mays) Zea mays terminal node Zea mays - Chr:1 GRMZM2G589058 GRMZM2G177867 GRMZM2G177928 ADA2 (GRMZM2G177974) GRMZM5G815323 GRMZM2G120484 GRMZM2G421500 GT1 (GRMZM2G421491) GRMZM2G421498 AC205111.3_FG001 GRMZM2G058158 GRMZM2G516809 GRMZM2G058144 GRMZM2G058032 GRMZM5G843115 GRMZM2G357074 GRMZM2G083677 GRMZM2G464782 AC192452.3_FG005 GRMZM2G164249 GRMZM5G810254 GRMZM2G164233 AC192452.3_FG002 GRMZM2G032962 GRMZM2G032339 AC186341.4_FG002 GRMZM2G316805 M24 (GRMZM2G087095) GRMZM2G513287 GRMZM2G021781 Click to hide this line (Sorghum bicolor) Sorghum bicolor terminal node Sorghum bicolor - Chr:1 SB01G007705 (Sb01g007705) 170F8.4 (Sb01g007710) 170F8.3 (Sb01g007720) 170F8.2 (Sb01g007730) 170F8.1 (Sb01g007740) SB01G007750 (Sb01g007750) SB01G007760 (Sb01g007760) CYB5 (Sb01g007770) SB01G007780 (Sb01g007780) SB01G007790 (Sb01g007790) SB01G007800 (Sb01g007800) Sb01g007810 SB01G007820 (Sb01g007820) SB01G007830 (Sb01g007830) SB01G007840 (Sb01g007840) SB01G007855 (Sb01g007855) SB01G007860 (Sb01g007860) SB01G007870 (Sb01g007870) SB01G007872 (Sb01g007872) SB01G007874 (Sb01g007874) SB01G007876 (Sb01g007876) SB01G007878 (Sb01g007878) SB01G007880 (Sb01g007880) SB01G007890 (Sb01g007890) SB01G007900 (Sb01g007900) SB01G007910 (Sb01g007910) SB01G007920 (Sb01g007920) SB01G007930 (Sb01g007930) SB01G007940 (Sb01g007940) SB01G007950 (Sb01g007950) Click to hide this line (Setaria italica) Setaria italica terminal node Setaria italica - scaffold_9 SI034278M.G (Si034278m.g) SI038787M.G (Si038787m.g) SI035820M.G (Si035820m.g) SI035669M.G (Si035669m.g) SI037994M.G (Si037994m.g) PAP2 (Si037197m.g) SI039860M.G (Si039860m.g) FUL1 (Si037627m.g) SI034953M.G (Si034953m.g) SI036402M.G (Si036402m.g) SI038527M.G (Si038527m.g) SI037336M.G (Si037336m.g) SI036417M.G (Si036417m.g) SI036131M.G (Si036131m.g) SI038380M.G (Si038380m.g) SI038028M.G (Si038028m.g) SI034803M.G (Si034803m.g) SI034415M.G (Si034415m.g) SI033905M.G (Si033905m.g) SI038100M.G (Si038100m.g) SI036087M.G (Si036087m.g) SI034940M.G (Si034940m.g) SI036007M.G (Si036007m.g) SI033948M.G (Si033948m.g) SI039703M.G (Si039703m.g) SI037683M.G (Si037683m.g) SI037215M.G (Si037215m.g) SI034545M.G (Si034545m.g) SI038457M.G (Si038457m.g) Click to show this node (core eudicotyledons) core eudicotyledons duplication node (click to collapse) Click to hide this line (core eudicotyledons) core eudicotyledons speciation node (click to collapse) core eudicotyledons Click to hide this line (Solanum) Solanum speciation node (click to collapse) Solanum Click to hide this line (Solanum tuberosum) Solanum tuberosum terminal node Solanum tuberosum - Chr:7 PGSC0003DMG402017380 (PGSC0003DMG402017380) PGSC0003DMG401017380 (PGSC0003DMG401017380) PGSC0003DMG400017379 (PGSC0003DMG400017379) PGSC0003DMG400017378 (PGSC0003DMG400017378) PGSC0003DMG400035925 (PGSC0003DMG400035925) PGSC0003DMG400034984 (PGSC0003DMG400034984) PGSC0003DMG400017403 (PGSC0003DMG400017403) PGSC0003DMG400017402 (PGSC0003DMG400017402) PGSC0003DMG400017401 (PGSC0003DMG400017401) PGSC0003DMG400017400 (PGSC0003DMG400017400) PGSC0003DMG400017399 (PGSC0003DMG400017399) PGSC0003DMG400017376 (PGSC0003DMG400017376) PGSC0003DMG400017375 (PGSC0003DMG400017375) PGSC0003DMG400017398 (PGSC0003DMG400017398) PGSC0003DMG400017397 (PGSC0003DMG400017397) PGSC0003DMG400017374 (PGSC0003DMG400017374) PGSC0003DMG400017373 (PGSC0003DMG400017373) PGSC0003DMG400017394 (PGSC0003DMG400017394) PGSC0003DMG400017370 (PGSC0003DMG400017370) PGSC0003DMG400036924 (PGSC0003DMG400036924) PGSC0003DMG400017393 (PGSC0003DMG400017393) PGSC0003DMG400017369 (PGSC0003DMG400017369) PGSC0003DMG400017368 (PGSC0003DMG400017368) PGSC0003DMG400037166 (PGSC0003DMG400037166) PGSC0003DMG400029184 (PGSC0003DMG400029184) PGSC0003DMG400029180 (PGSC0003DMG400029180) PGSC0003DMG400029183 (PGSC0003DMG400029183) PGSC0003DMG402029181 (PGSC0003DMG402029181) PGSC0003DMG400029182 (PGSC0003DMG400029182) Click to hide this line (Solanum lycopersicum) Solanum lycopersicum terminal node Solanum lycopersicum - Chr:7 Solyc07g045320.2 Solyc07g045330.2 Solyc07g045340.2 Solyc07g045350.2 Solyc07g045370.2 Solyc07g045380.2 Solyc07g045390.1 Solyc07g045400.1 Solyc07g045410.1 Solyc07g045420.2 Solyc07g045430.2 Solyc07g045440.1 Solyc07g045450.1 Solyc07g045460.2 Solyc07g045470.1 Solyc07g045490.1 Solyc07g045500.1 Solyc07g045510.2 Solyc07g045520.2 Solyc07g045530.1 Solyc07g045540.2 Solyc07g045550.1 Solyc07g045560.1 Solyc07g045570.1 Solyc07g045580.1 Solyc07g045590.1 Solyc07g045600.1 Solyc07g045610.1 Solyc07g047610.2 Click to show this node (rosids) rosids speciation node (click to collapse) Click to hide this line (Vitis vinifera) Vitis vinifera terminal node Vitis vinifera - Chr:12 VIT_12s0057g00800 VIT_12s0057g00810 VIT_12s0057g00820 VIT_12s0057g00860 VIT_12s0057g00870 VIT_12s0057g00880 VIT_12s0057g00890 VIT_12s0057g00900 VIT_12s0057g00910 VIT_12s0057g00920 VIT_12s0057g00930 VIT_12s0057g00940 VIT_12s0057g00950 VIT_12s0057g00960 VIT_12s0057g00970 VIT_12s0057g00990 VIT_12s0057g01000 VIT_12s0057g01010 VIT_12s0057g01020 VIT_12s0057g01030 VIT_12s0057g01040 VIT_12s0057g01050 VIT_12s0057g01060 VIT_12s0057g01070 VIT_12s0057g01080 VIT_12s0057g01090 VIT_12s0057g01100 VIT_12s0057g01110 VIT_12s0057g01120 VIT_12s0057g01130 Click to show this node (core eudicotyledons) core eudicotyledons speciation node (click to collapse) Click to show this node (rosids) rosids speciation node (click to collapse) Click to hide this line (Brassicaceae) Brassicaceae speciation node (click to collapse) Brassicaceae Click to hide this line (Arabidopsis) Arabidopsis speciation node (click to collapse) Arabidopsis Click to hide this line (Arabidopsis lyrata subsp. lyrata) Arabidopsis lyrata subsp. lyrata terminal node Arabidopsis lyrata subsp. lyrata - Chr:7 fgenesh1_pg.C_scaffold_7002738 Al_scaffold_0007_3163 fgenesh2_kg.7__3066__AT5G35750.1 fgenesh2_kg.7__3067__AT5G35753.1 Al_scaffold_0007_3167 Al_scaffold_0007_3168 scaffold_703449.1 fgenesh1_pg.C_scaffold_7002743 scaffold_703451.1 Al_scaffold_0007_3172 G6PD1 (fgenesh2_kg.7__3069__AT5G35790.1) scaffold_703454.1 Al_scaffold_0007_3175 scaffold_703455.1 scaffold_703458.1 Al_scaffold_0007_3181 fgenesh2_kg.7__3071__AT5G35870.1 fgenesh1_pg.C_scaffold_7002750 fgenesh1_pg.C_scaffold_7002751 scaffold_703464.1 fgenesh2_kg.7__3073__AT5G43730.1 Al_scaffold_0007_3187 Al_scaffold_0007_3188 scaffold_703467.1 fgenesh1_pm.C_scaffold_7002445 fgenesh2_kg.7__3076__AT5G35940.1 Al_scaffold_0007_3192 fgenesh1_pg.C_scaffold_7002757 scaffold_703471.1 Click to hide this line (Arabidopsis thaliana) Arabidopsis thaliana terminal node Arabidopsis thaliana - Chr:5 AT5G35698 FIM2 (AT5G35700) CYP71B8 (AT5G35715) AT5G35730 AT5G35732 AT5G35735 AT5G35737 AHK2 (AT5G35750) AT5G35753 AT5G35760 SAP (AT5G35770) G6PD1 (AT5G35790) AT5G35810 AT5G35830 AT5G35870 AT5G35890 LBD35 (AT5G35900) RRP6L2 (AT5G35910) CYP79A3P (AT5G35917) CYP79A4P (AT5G35920) AT5G35926 AT5G35930 AT5G35940 AT5G35945 AT5G35950 AT5G35960 AT5G35970 (AT5G35970) YAK1 (AT5G35980) AT5G35995 Click to hide this line (Brassica rapa subsp. pekinensis) Brassica rapa subsp. pekinensis terminal node Brassica rapa subsp. pekinensis - Chr:A05 Bra018555 (Bra018555) Bra018556 (Bra018556) Bra018557 (Bra018557) Bra018558 (Bra018558) Bra018559 (Bra018559) Bra018560 (Bra018560) Bra018561 (Bra018561) Bra018562 (Bra018562) Bra018563 (Bra018563) Bra039479 (Bra039479) Bra039480 (Bra039480) Bra039481 (Bra039481) Bra039482 (Bra039482) Bra039483 (Bra039483) Bra039484 (Bra039484) Bra039486 (Bra039486) Bra039487 (Bra039487) Bra039488 (Bra039488) Bra039489 (Bra039489) Bra039490 (Bra039490) Bra039491 (Bra039491) Bra039492 (Bra039492) Bra039493 (Bra039493) Bra039494 (Bra039494) Bra039495 (Bra039495) Bra039496 (Bra039496) Bra039497 (Bra039497) Bra039498 (Bra039498) Bra039499 (Bra039499) Bra039500 (Bra039500) F14J9.12 (AT1G09460) Al_scaffold_0001_908 Bra020023 (Bra020023) GLYMA03G38770 GSMUA_Achr4G32790_001 (GSMUA_Achr4G32790_001) GSMUA_Achr4G32790_001 (GSMUA_Achr4G32790_001) GSMUA_Achr6G00220_001 (GSMUA_Achr6G00220_001) MLOC_54984 OB03G41370 (OB03G41370) SI039775M.G (Si039775m.g) scaffold_703445.1 AT5G35740 MYB61 (AT1G09540) scaffold_100991.1 Bra020016 (Bra020016) Bra031669 (Bra031669) MYB89 (GLYMA20G22230) GLYMA10G28250 MTR_1g085040 GLYMA19G41250 MYB160 (GLYMA03G38660) MYB216 (POPTR_0013s00290) VIT_14s0060g00240 Solyc10g044680.1 PGSC0003DMG400015767 (PGSC0003DMG400015767) GLP5 (AT1G09560) Al_scaffold_0001_916 Bra020014 (Bra020014) Bra031671 (Bra031671) GLYMA20G22180 GLYMA10G28020 GLYMA10G28190 MTR_1g085140 GLYMA19G41070 GLYMA19G41220 GLP21 (GLYMA03G38630) POPTRDRAFT_834434 (POPTR_0013s00240) VIT_14s0060g00120 ACLA-3 (AT1G09430) ACLA-3 (fgenesh2_kg.1__990__AT1G09430.1) GSMUA_Achr8G06210_001 (GSMUA_Achr8G06210_001) PGSC0003DMG400029179 (PGSC0003DMG400029179) AT1G09640 (AT1G09640) fgenesh2_kg.1__1017__AT1G09640.1 Bra020005 (Bra020005) Bra031676 (Bra031676) AT1G09645 scaffold_101004.1 Bra020004 (Bra020004) AT1G09580 fgenesh2_kg.1__1010__AT1G09580.1 Bra020010 (Bra020010) Bra031678 (Bra031678) F21M12.1 (AT1G09620) fgenesh2_kg.1__1014__AT1G09620.1 Bra020007 (Bra020007) Bra031675 (Bra031675) F14J9.17 (AT1G09510) fgenesh2_kg.1__1000__AT1G09510.1 Bra031666 (Bra031666) scaffold_100985.1 AT1G09665 Al_scaffold_0001_930 Bra020002 (Bra020002) F14J9.21 (AT1G09550) fgenesh1_pm.C_scaffold_1000777 GLYMA20G22210 GLYMA10G28230 MTR_1g085070 GLYMA19G41240 GLYMA03G38650 POPTRDRAFT_240173 (POPTR_0013s00280) VIT_14s0060g00230 Bra020015 (Bra020015) AT1G09575 Al_scaffold_0001_918 Bra020011 (Bra020011) F14J9.10 (AT1G09440) fgenesh1_pm.C_scaffold_1000767 Bra020024 (Bra020024) Bra031665 (Bra031665) AT1G09625 scaffold_101001.1 F14J9.14 (AT1G09480) AT1G09650 fgenesh2_kg.1__1019__AT1G09650.1 F14J9.18 (AT1G09520) fgenesh2_kg.1__1001__AT1G09520.1 Bra020018 (Bra020018) Bra031667 (Bra031667) AT1G09600 Bra020008 (Bra020008) Bra031674 (Bra031674) GRMZM2G418223 F14J9.16 (AT1G09500) fgenesh2_kg.1__999__AT1G09500.1 AT1G09660 fgenesh2_kg.1__1021__AT1G09660.1 Bra020003 (Bra020003) GXM1 (AT1G09610) scaffold_100999.1 F14J9.15 (AT1G09490) fgenesh2_kg.1__996__AT1G09490.1 Bra020021 (Bra020021) Bra020020 (Bra020020) Bra020019 (Bra020019) AT1G09483 fgenesh2_kg.1__994__AT1G09470.1 Bra020022 (Bra020022) F14J9.11 (AT1G09450) fgenesh1_pm.C_scaffold_1000768 GLYMA03G38780 PIF3 (AT1G09530) fgenesh2_kg.1__1002__AT1G09530.2 Bra020017 (Bra020017) Bra031668 (Bra031668) GLYMA20G22291 GLYMA10G28290 GLYMA19G41261 GLYMA03G38675 POPTRDRAFT_662518 (POPTR_0013s00310) VIT_14s0060g00260 AT1G09680 scaffold_101007.1 Bra020001 (Bra020001) Solyc07g047620.1 EPlGT00140000001372.a.b.a EPlGT00140000001372.a.b.a EPlGT00140000001372.a.b.a EPlGT00140000001372.a.b.a EPlGT00140000001372.a.b.a PHYA (AT1G09570) fgenesh2_kg.1__1007__AT1G09570.1 Bra020013 (Bra020013) Bra031672 (Bra031672) EPlGT00140000001372.a.b.a EPlGT00140000001372.a.b.a.c PHYA (GLYMA20G22160) GMPHYA1 (GLYMA10G28170) MTR_1g085160 GMPHYA3 (GLYMA19G41210) GLYMA03G38620 PHYA (POPTR_0013s00220) PHYA (VIT_14s0060g00100) EPlGT00140000001372.a.b.a PHYA (Solyc10g044670.1) PHYA (PGSC0003DMG400015766) EPlGT00140000001372.a.b.a.a.a.a EPlGT00140000001372.a.b.a.a.a.a EPlGT00140000001372.a.b.a.a.a.a BRADI1G10510 BRADI1G10520 BRADI1G10510 BRADI1G10520 PHYA (MLOC_81684) EPlGT00140000001372.a.b.a.a.a.a EPlGT00140000001372.a.b.a.a.a.a PHYA (LOC_Os03g51030) BGIOSGA009906 ORGLA03G0410100 OB03G39220 (OB03G39220) EPlGT00140000001372.a.b.a.a.a.a EPlGT00140000001372.a.b.a.a.a.a PHYA1 (GRMZM2G181028) PHYA1 (GRMZM2G157727) PHYA (Sb01g009920) SB01G009930 (Sb01g009930) PHYA (Sb01g009920) SB01G009930 (Sb01g009930) SI033984M.G (Si033984m.g) SI027327M.G (Si027327m.g) EPlGT00140000001372.a.b.a.a.b GSMUA_Achr5G27310_001 (GSMUA_Achr5G27310_001) GRMZM2G387155 GSMUA_Achr8G06130_001 (GSMUA_Achr8G06130_001) EPlGT00140000001372.a.b.b EPlGT00140000001372.a.b.b SB0919S002010 (Sb0919s002010) GRMZM2G111939 Bra001650 (Bra001650) EPlGT00140000001372.a.a EPlGT00140000001372.a.a GSMUA_Achr4G32930_001 (GSMUA_Achr4G32930_001) GSMUA_Achr4G32940_001 (GSMUA_Achr4G32940_001) GSMUA_Achr4G32930_001 (GSMUA_Achr4G32930_001) GSMUA_Achr4G32940_001 (GSMUA_Achr4G32940_001) GSMUA_Achr6G00080_001 (GSMUA_Achr6G00080_001) EPlGT00140000001372.a.a EPlGT00140000001372.a.a EPlGT00140000001372.a.a BRADI1G08400 PHYC (MLOC_824) EPlGT00140000001372.a.a EPlGT00140000001372.a.a LOC_Os03g54084 BGIOSGA013571 ORGLA03G0314300 OB03G41420 (OB03G41420) EPlGT00140000001372.a.a EPlGT00140000001372.a.a GRMZM2G105312 GRMZM2G171949 PHYC2 (GRMZM2G129889) GRMZM2G027493 GRMZM2G345509 PHYC1 (GRMZM2G057935) PHYC (Sb01g007850) SI034030M.G (Si034030m.g) EPlGT00140000001372.a.a.e EPlGT00140000001372.a.a.e PGSC0003DMG400017396 (PGSC0003DMG400017396) PHYF (Solyc07g045480.2) PHYC (VIT_12s0057g00980) EPlGT00140000001372.a.a.f EPlGT00140000001372.a.a.f fgenesh2_kg.7__3070__AT5G35840.1 PHYC (AT5G35840) Bra039485 (Bra039485) RPL21A (AT1G09590) scaffold_101008.1 AT1G09470 ATRAB11C (AT1G09630) scaffold_101002.1 Bra020006 (Bra020006) RPL21A (AT1G09690) fgenesh2_kg.1__1011__AT1G09590.1 Bra020009 (Bra020009) Bra020000 (Bra020000) Bra031682 (Bra031682) Bra031673 (Bra031673)