Genomicus v24.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for BRADI2G34810 (Brachypodium distachyon)		AlignView depth	PhyloView depth
Viridiplantae	~10 Mya	84 species	180 homologs (oldest homol. - dupl. node) 167 homologs
Embryophyta	~10 Mya	80 species	163 homologs
Tracheophyta	~10 Mya	78 species	157 homologs
Magnoliophyta	~10 Mya	76 species	153 homologs
Mesangiospermae	~10 Mya	74 species	151 homologs
Commelinids	~10 Mya	31 species	70 homologs
Poaceae	~10 Mya	29 species	64 homologs (dupl. node) 41 homologs
BEP clade	~10 Mya	23 species	35 homologs
Pooideae	~10 Mya	8 species	20 homologs (dupl. node) 5 homologs
Brachypodium distachyon	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here