Reference Gene Name: LIR1 (Os01g0102900)
Reference Species : oryza.sativa
Root Species : poaceae 		poaceae to oryza.sativa
×2 ÷2 Center the view on the reference gene Shift 1 gene on the left Shift 5 genes on the left Shift 1 gene on the right Shift 5 genes on the right Zoom out Show 1 less gene on each side Show 1 more gene on each side Show half the number of genes on each side Show twice more genes on each side Zoom in
Schematic scale
Genomic scale
poaceae speciation node (click to collapse) poaceae - block_58 Fam114795.B.a.e.a Fam116060.B Fam113077.C.a.k.a Fam001059.B Fam107849.b.a.a.b Fam000693.a.a.b.b Fam116256.a Fam112942.A.b.a Fam111745.a.a.a.b.b.a.b.b Fam114034.B.a.b.a.a Click to hide this line (bop.clade) bop.clade speciation node (click to collapse) bop.clade - block_17 Fam114923.b Fam114034.B.a.b.a.a Fam111745.a.a.a.b.b.a.b.b Fam112942.A.b.a Fam116256.a Fam107849.b.a.a.b Fam001059.B Fam113077.C.a.k.a Fam116060.B Click to hide this line (oryzinae) oryzinae duplication node (click to collapse) oryzinae Click to hide this line (oryzinae) oryzinae speciation node (click to collapse) oryzinae - block_1 Fam114034.B.a.b.a.a Fam111745.a.a.a.b.b.a.b.b Fam112942.A.b.a Fam116256.a.a Fam107849.b.a.a.b Fam116060.B Fam114795.B.a.e.a Fam103599.a.b.b.a Click to hide this line (oryza) oryza speciation node (click to collapse) oryza - block_76 Fam116060.B Fam011399 Fam116256.a.a.a.b.a.a Fam001918.c.b.a Fam116146.c.a Fam112942.A.b.a.a.b.b Click to hide this line (oryza_sativa) oryza_sativa speciation node (click to collapse) oryza_sativa - block_1 Fam011399 Fam116256.a.a.a.b.a.a Fam001918.c.b.a Fam116146.c.a Fam112942.A.b.a.a.b.b Click to hide this line (oryza.sativa) oryza.sativa terminal node oryza.sativa - Chr:1 Click to hide this line (oryza.rufipogon) oryza.rufipogon terminal node oryza.rufipogon - Chr:1 ORUFI01G00050 ORUFI01G00060 ORUFI01G00070 ORUFI01G00080 ORUFI01G00090 ORUFI01G00110 ORUFI01G00240 ORUFI01G00300 ORUFI01G00340 ORUFI01G00350 Click to hide this line (oryza.indica) oryza.indica terminal node oryza.indica - Chr:1 BGIOSGA002577 BGIOSGA002578 BGIOSGA002580 BGIOSGA002590 BGIOSGA002559 BGIOSGA002598 Click to hide this line (oryza.glaberrima) oryza.glaberrima terminal node oryza.glaberrima - Chr:1 ORGLA01G0000300 ORGLA01G0000600 ORGLA01G0002200 ORGLA01G0002700 ORGLA01G0003000 ORGLA01G0003100 ORGLA01G0003200 ORGLA01G0003300 Click to hide this line (oryza.barthii) oryza.barthii terminal node oryza.barthii - Chr:1 OBART01G00090 OBART01G00100 OBART01G00110 OBART01G00130 OBART01G00280 OBART01G00340 OBART01G00380 OBART01G00390 Click to hide this line (oryza.glumipatula) oryza.glumipatula terminal node oryza.glumipatula - Chr:1 OGLUM01G00060 OGLUM01G00070 OGLUM01G00080 OGLUM01G00090 OGLUM01G00100 OGLUM01G00110 OGLUM01G00240 OGLUM01G00260 OGLUM01G00310 OGLUM01G00320 Click to hide this line (oryza.longistaminata) oryza.longistaminata terminal node oryza.longistaminata - Chr:KN538826.1 KN538826.1_FG007 KN538826.1_FG004 KN538826.1_FG013 KN538826.1_FG020 KN538826.1_FG024 KN538826.1_FG012 KN538826.1_FG003 KN538826.1_FG053 KN538826.1_FG049 KN538826.1_FG060 KN538826.1_FG056 Click to hide this line (oryza.punctata) oryza.punctata terminal node oryza.punctata - Chr:1 OPUNC01G00060 OPUNC01G00070 OPUNC01G00080 OPUNC01G00120 OPUNC01G00250 OPUNC01G00340 OPUNC01G00350 OPUNC01G00360 Click to hide this line (leersia.perrieri) leersia.perrieri terminal node leersia.perrieri - Chr:1 LPERR01G00010 LPERR01G00020 LPERR01G00030 LPERR01G00040 LPERR01G00050 LPERR01G00060 LPERR01G00190 LPERR01G00210 LPERR01G00250 LPERR01G00280 LPERR01G00300 LPERR01G00310 Click to hide this line (oryzinae) oryzinae speciation node (click to collapse) oryzinae Click to hide this line (oryza) oryza speciation node (click to collapse) oryza Click to hide this line (oryza.brachyantha) oryza.brachyantha terminal node oryza.brachyantha - Chr:1 OB01G10070 OB01G10110 OB01G10120 OB01G10250 OB01G10320 OB01G10330 OB01G10340 OB01G10350 OB01G10360 OB01G10370 Click to hide this line (pooideae) pooideae speciation node (click to collapse) pooideae - block_123 Fam001059.B Fam044285 Fam103350.H.b.b.a.a.a.a.b.a.b Fam112150.A.e.a.a.a Click to hide this line (triticeae) triticeae speciation node (click to collapse) triticeae - block_70 Fam107849.b.a.a.b Fam112150.A.e.a.a.a Fam103350.H.b.b.a.a.a.a.b.a.b.b Fam109560.b.a.a.a.a Fam044285 Fam001059.B Fam110495.B.b.b.a.a.b Click to hide this line (triticinae) triticinae speciation node (click to collapse) triticinae - block_25 Fam122350.A.b.b.a.b.a.b.b.b.b.b.b Fam122350.A.b.b.a.b.a.b.b.b.b.b.a.b Fam104571.C.a.h Fam126211.b.a.a.a.b.c.b Fam115591.C.b.b Fam111983.D.a.a.a.a.a.a.a.a.a.b Fam000001.c.b.a.a.b.a.b.a.a.a.a.a.a.a.b.b Fam112064.a.c.a.a.a.a.a.a.b.d Fam117158.b.b Fam029047 Fam107849.b.a.a.b Fam003367.B.a Fam112150.A.e.a.a.a Fam127197.A.a.a.b.a.b.b Fam126231.I.a Fam103350.H.b.b.a.a.a.a.b.a.b.b.a Fam109560.b.a.a.a.a Fam000193.a.b Fam122350.A.b.b.a.b.a.a.b.b.a.a.b.a.a.b.b Fam044285 Fam001059.B Click to hide this line (triticum) triticum duplication node (click to collapse) triticum Click to hide this line (triticum) triticum speciation node (click to collapse) triticum - block_35 Fam001157.B.b Fam126211.b.a.a.a.b.c.b Fam115591.C.b.b.b Fam111983.D.a.a.a.a.a.a.a.a.a.b Fam000001.c.b.a.a.b.a.b.a.a.a.a.a.a.a.b.b Fam103951.c.b.d.b.a.a.b Fam115591.C.b.b.a.a.a Fam112064.a.c.a.a.a.a.a.a.b.d Fam117158.b.b Fam029047 Fam107849.b.a.a.b Fam117605.a.a Fam003367.B.a Fam127197.A.a.a.b.a.b.b.b Fam126231.I.a Fam103350.H.b.b.a.a.a.a.b.a.b.b.a.a.b Fam112150.A.e.a.a.a.a Fam122480.A.b.a.b.a.b.a.b Fam112150.A.e.a.a.a.b Fam103350.H.b.b.a.a.a.a.b.a.b.b.a.b Fam001189.a.b.a Fam109560.b.a.a.a.a Fam000193.a.b Click to hide this line (triticum.dicoccoides.A) triticum.dicoccoides.A terminal node triticum.dicoccoides.A - Chr:3A TRIDC3AG009540 TRIDC3AG009550 TRIDC3AG009560 TRIDC3AG009570 TRIDC3AG009580 TRIDC3AG009590 TRIDC3AG009600 TRIDC3AG009610 TRIDC3AG009640 TRIDC3AG009660 TRIDC3AG009680 TRIDC3AG009690 TRIDC3AG009700 TRIDC3AG009720 TRIDC3AG009760 TRIDC3AG009770 TRIDC3AG009810 TRIDC3AG009820 TRIDC3AG009840 TRIDC3AG009940 TRIDC3AG009990 Click to hide this line (triticum.aestivum.A) triticum.aestivum.A terminal node triticum.aestivum.A - Chr:3A TraesCS3A02G079800 TraesCS3A02G079900 TraesCS3A02G080000 TraesCS3A02G080100 TraesCS3A02G080200 TraesCS3A02G080300 TraesCS3A02G080400 TraesCS3A02G080500 TraesCS3A02G080600 TraesCS3A02G080700 TraesCS3A02G080800 TraesCS3A02G080900 TraesCS3A02G081000 TraesCS3A02G081200 TraesCS3A02G081500 TraesCS3A02G081600 TraesCS3A02G081700 TraesCS3A02G081800 TraesCS3A02G082000 TraesCS3A02G082200 TraesCS3A02G082300 TraesCS3A02G082400 TraesCS3A02G082500 TraesCS3A02G082600 Click to hide this line (triticum.turgidum.A) triticum.turgidum.A terminal node triticum.turgidum.A - Chr:3A TRITD3Av1G022770 TRITD3Av1G022850 TRITD3Av1G022860 TRITD3Av1G022900 TRITD3Av1G022910 TRITD3Av1G022970 TRITD3Av1G022980 TRITD3Av1G022990 TRITD3Av1G023050 TRITD3Av1G023060 TRITD3Av1G023200 TRITD3Av1G023210 TRITD3Av1G023220 TRITD3Av1G023230 TRITD3Av1G023380 TRITD3Av1G023430 TRITD3Av1G023440 TRITD3Av1G023480 TRITD3Av1G023510 TRITD3Av1G023570 TRITD3Av1G023620 TRITD3Av1G023660 TRITD3Av1G023740 TRITD3Av1G023830 Click to hide this line (triticum.urartu) triticum.urartu terminal node triticum.urartu - scaffold143204 TRIUR3_08452 TRIUR3_08453 TRIUR3_08455 Click to hide this line (triticum.dicoccoides.B) triticum.dicoccoides.B terminal node triticum.dicoccoides.B - Chr:3B TRIDC3BG013220 TRIDC3BG013270 TRIDC3BG013280 TRIDC3BG013290 TRIDC3BG013310 TRIDC3BG013360 TRIDC3BG013370 TRIDC3BG013380 TRIDC3BG013390 TRIDC3BG013410 TRIDC3BG013420 TRIDC3BG013450 TRIDC3BG013490 TRIDC3BG013500 TRIDC3BG013520 TRIDC3BG013540 TRIDC3BG013560 TRIDC3BG013570 TRIDC3BG013670 Click to hide this line (triticum.aestivum.B) triticum.aestivum.B terminal node triticum.aestivum.B - Chr:3B TraesCS3B02G094500 TraesCS3B02G094600 TraesCS3B02G094800 TraesCS3B02G094900 TraesCS3B02G095100 TraesCS3B02G095200 TraesCS3B02G095300 TraesCS3B02G095400 TraesCS3B02G095500 TraesCS3B02G095700 TraesCS3B02G095800 TraesCS3B02G096000 TraesCS3B02G096100 TraesCS3B02G096300 TraesCS3B02G096600 TraesCS3B02G096700 TraesCS3B02G096800 TraesCS3B02G096900 TraesCS3B02G097100 TraesCS3B02G097300 TraesCS3B02G097400 TraesCS3B02G097500 TraesCS3B02G097600 TraesCS3B02G097700 Click to hide this line (triticum.turgidum.B) triticum.turgidum.B terminal node triticum.turgidum.B - Chr:3B TRITD3Bv1G026480 TRITD3Bv1G026500 TRITD3Bv1G026660 TRITD3Bv1G026780 TRITD3Bv1G026770 TRITD3Bv1G026860 TRITD3Bv1G026880 TRITD3Bv1G027010 TRITD3Bv1G027080 TRITD3Bv1G027190 TRITD3Bv1G027230 TRITD3Bv1G027260 TRITD3Bv1G027350 TRITD3Bv1G027390 TRITD3Bv1G027410 TRITD3Bv1G027420 TRITD3Bv1G027430 TRITD3Bv1G027480 TRITD3Bv1G027550 TRITD3Bv1G027670 TRITD3Bv1G027680 TRITD3Bv1G027700 TRITD3Bv1G027770 Click to hide this line (triticum) triticum speciation node (click to collapse) triticum - block_35 Fam000001.c.b.a.a.b.a.b.a.a.a.a.a.a.a.b.b Fam103951.c.b.d.b.a.a.b Fam115591.C.b.b.a.a.a Fam112064.a.c.a.a.a.a.a.a.b.d Fam117158.b.b Fam029047 Fam107849.b.a.a.b Fam117605.a.a Fam003367.B.a Fam127197.A.a.a.b.a.b.b.b Fam126231.I.a Fam103350.H.b.b.a.a.a.a.b.a.b.b.a.a.b Fam112150.A.e.a.a.a.a Fam122480.A.b.a.b.a.b.a.b Fam112150.A.e.a.a.a.b Fam103350.H.b.b.a.a.a.a.b.a.b.b.a.b Fam001189.a.b.a Fam109560.b.a.a.a.a Fam000193.a.b Fam122350.A.b.b.a.b.a.a.b.b.a.a.b.a.a.b.b.b Fam044285 Click to hide this line (triticum.turgidum.B) triticum.turgidum.B terminal node triticum.turgidum.B - Chr:3B TRITD3Bv1G026660 TRITD3Bv1G026780 TRITD3Bv1G026770 TRITD3Bv1G026860 TRITD3Bv1G026880 TRITD3Bv1G027010 TRITD3Bv1G027080 TRITD3Bv1G027190 TRITD3Bv1G027230 TRITD3Bv1G027260 TRITD3Bv1G027350 TRITD3Bv1G027390 TRITD3Bv1G027410 TRITD3Bv1G027420 TRITD3Bv1G027430 TRITD3Bv1G027480 TRITD3Bv1G027550 TRITD3Bv1G027670 TRITD3Bv1G027680 TRITD3Bv1G027700 TRITD3Bv1G027770 TRITD3Bv1G027870 Click to hide this line (triticum.aestivum.B) triticum.aestivum.B terminal node triticum.aestivum.B - Chr:3B TraesCS3B02G094800 TraesCS3B02G094900 TraesCS3B02G095100 TraesCS3B02G095200 TraesCS3B02G095300 TraesCS3B02G095400 TraesCS3B02G095500 TraesCS3B02G095700 TraesCS3B02G095800 TraesCS3B02G096000 TraesCS3B02G096100 TraesCS3B02G096300 TraesCS3B02G096600 TraesCS3B02G096700 TraesCS3B02G096800 TraesCS3B02G096900 TraesCS3B02G097100 TraesCS3B02G097300 TraesCS3B02G097400 TraesCS3B02G097500 TraesCS3B02G097600 TraesCS3B02G097700 Click to hide this line (triticinae_a) triticinae_a speciation node (click to collapse) triticinae_a - block_120 Fam003367.B.a Click to hide this line (triticum.aestivum.D) triticum.aestivum.D terminal node triticum.aestivum.D - Chr:3D TraesCS3D02G079700 TraesCS3D02G079900 TraesCS3D02G080000 TraesCS3D02G080100 TraesCS3D02G080200 TraesCS3D02G080400 TraesCS3D02G080500 TraesCS3D02G080600 TraesCS3D02G080700 TraesCS3D02G080800 TraesCS3D02G080900 TraesCS3D02G081000 TraesCS3D02G081200 TraesCS3D02G081500 TraesCS3D02G081600 TraesCS3D02G081800 TraesCS3D02G081900 TraesCS3D02G082000 TraesCS3D02G082100 TraesCS3D02G082400 TraesCS3D02G082500 TraesCS3D02G082600 TraesCS3D02G082900 Click to hide this line (hordeum) hordeum speciation node (click to collapse) hordeum - block_108 Fam116256.a Fam104314.a.a Fam122350.A.b.b.a.b.a.b.b.b.b.b Fam104571.C.a.h Fam126211.b.a.a.a.b.c.b Fam115591.C.b.b Fam117158.b.b Fam112705.d.a.a.a.a.a.b.f Fam107849.b.a.a.b Fam000037.F.a.a Fam111937.a.a.a.a.b.b.a.b.b.b.a.a.a.b.a.b.a.a.b.a Fam112150.A.e.a.a.a Fam103350.H.b.b.a.a.a.a.b.a.b.b Fam109560.b.a.a.a.a Click to hide this line (hordeum.vulgare.goldenpromise) hordeum.vulgare.goldenpromise terminal node hordeum.vulgare.goldenpromise - Chr:contig3 HORVU.MOREX.r2.3HG0192170.1 HORVU.MOREX.r2.3HG0192200.1 HORVU.MOREX.r2.3HG0192210.1 HORVU.MOREX.r2.3HG0192220.1 HORVU.MOREX.r2.3HG0192230.1 HORVU.MOREX.r2.3HG0192250.1 HORVU.MOREX.r2.3HG0192260.1 HORVU.MOREX.r2.3HG0192300.1 HORVU.MOREX.r2.3HG0192320.1 HORVU.MOREX.r2.3HG0192330.1 HORVU.MOREX.r2.3HG0192340.1 HORVU.MOREX.r2.3HG0192350.1 HORVU.MOREX.r2.3HG0192370.1 HORVU.MOREX.r2.3HG0192390.1 HORVU.MOREX.r2.UnG0632970.1 HORVU.MOREX.r2.3HG0192460.1 HORVU.MOREX.r2.3HG0192450.1 HORVU.MOREX.r2.3HG0192490.1 HORVU.MOREX.r2.3HG0192520.1 HORVU.MOREX.r2.3HG0192540.1 HORVU.MOREX.r2.3HG0192550.1 HORVU.MOREX.r2.3HG0192560.1 HORVU.MOREX.r2.3HG0192580.1 Click to hide this line (brachypodium.distachyon) brachypodium.distachyon terminal node brachypodium.distachyon - Chr:2 BRADI_2g03454v3 BRADI_2g03497v3 BRADI_2g03520v3 BRADI_2g03550v3 BRADI_2g03567v3 BRADI_2g03588v3 BRADI_2g03597v3 psbN (BRADI_2g03624v3) BRADI_2g03683v3 BRADI_2g03690v3 BRADI_2g03717v3 Click to hide this line (panicoideae) panicoideae speciation node (click to collapse) panicoideae - block_1 Fam113077.C.a.k.a Fam116060.B Fam114795.B.a.e.a Fam122448.B.a.a.a.a.a.a.b Fam113624.D.c.a.a Fam065834 Fam001059.B Fam107849.b.a.a.b Fam000693.a.a.b.b Fam116256.a Fam000840.B.j Fam112942.A.b.a Click to hide this line (andropogoneae) andropogoneae duplication node (click to collapse) andropogoneae Click to hide this line (andropogoneae) andropogoneae speciation node (click to collapse) andropogoneae - block_31 Fam112942.A.b.a Fam116256.a Fam000693.a.a.b.b Fam107849.b.a.a.b Fam001059.B Fam113624.D.c.a.a Fam122255.B.a.b.g.a Fam113077.C.a.k.a Click to hide this line (saccharum.spontaneum) saccharum.spontaneum duplication node (click to collapse) saccharum.spontaneum Click to hide this line (saccharum.spontaneum) saccharum.spontaneum duplication node (click to collapse) saccharum.spontaneum Click to hide this line (saccharum.spontaneum) saccharum.spontaneum duplication node (click to collapse) saccharum.spontaneum Click to hide this line (saccharum.spontaneum) saccharum.spontaneum terminal node saccharum.spontaneum - Chr:3C Sspon.03G0017900-2C Sspon.03G0017910-3C Sspon.03G0017940-3C Sspon.03G0043180-1C Sspon.03G0035230-2C Sspon.03G0043190-1C Sspon.03G0043200-1C Sspon.03G0043210-1C Sspon.03G0035270-2C Sspon.03G0043220-1C Sspon.03G0035330-2C Sspon.03G0035350-2C Sspon.03G0035340-2C Sspon.03G0018340-1T Sspon.03G0035380-2C Sspon.03G0018310-3T Sspon.03G0018310-3C Click to hide this line (saccharum.spontaneum) saccharum.spontaneum terminal node saccharum.spontaneum - Chr:3C Sspon.03G0043190-1C Sspon.03G0043200-1C Sspon.03G0043210-1C Sspon.03G0035270-2C Sspon.03G0043220-1C Sspon.03G0035330-2C Sspon.03G0035350-2C Sspon.03G0035340-2C Sspon.03G0018340-1T Sspon.03G0035380-2C Sspon.03G0018310-3T Sspon.03G0018310-3C Sspon.03G0018300-2C Sspon.03G0018300-1T Sspon.03G0018290-3C Sspon.03G0018390-2C Sspon.03G0018420-2C Click to hide this line (saccharum.spontaneum) saccharum.spontaneum terminal node saccharum.spontaneum - Chr:3A Sspon.03G0017940-1A Sspon.03G0017950-1A Sspon.03G0017960-1A Sspon.03G0017970-1A Sspon.03G0017990-1A Sspon.03G0018010-1A Sspon.03G0018040-1A Sspon.03G0018080-1A Sspon.03G0018100-1A Sspon.03G0018050-1P Sspon.03G0018170-1A Sspon.03G0018180-1A Sspon.03G0018210-1A Sspon.03G0018230-1A Sspon.03G0018240-1A Sspon.03G0018270-1A Sspon.03G0018280-1A Click to hide this line (saccharum.spontaneum) saccharum.spontaneum terminal node saccharum.spontaneum - Chr:3B Sspon.03G0035240-1B Sspon.03G0018010-2B Sspon.03G0018020-2B Sspon.03G0035260-1B Sspon.03G0035270-1B Sspon.03G0035280-1B Sspon.03G0018050-2B Sspon.03G0035310-1B Sspon.03G0018080-2B Sspon.03G0018290-2B Sspon.03G0018310-2B Sspon.03G0018310-2T Sspon.03G0018670-2B Sspon.03G0035390-1B Sspon.03G0018680-2B Sspon.03G0018650-2B Sspon.03G0035400-1B Sspon.03G0035410-1B Sspon.03G0016180-2B Sspon.03G0016060-2B Sspon.03G0016080-2B Click to hide this line (NAME_0) NAME_0 speciation node (click to collapse) NAME_0 - block_21 Fam113077.C.a.k.a Fam122255.B.a.b.g.a Fam113624.D.c.a.a Fam001059.B Fam107849.b.a.a.b Fam000693.a.a.b.b Fam116256.a Fam112942.A.b.a Fam111745.a.a.a.b.b.a.b.b Click to hide this line (sorghum.bicolor) sorghum.bicolor terminal node sorghum.bicolor - Chr:3 SORBI_3003G106200 SORBI_3003G106500 SORBI_3003G106900 SORBI_3003G107000 SORBI_3003G108000 SORBI_3003G108050 SORBI_3003G108200 SORBI_3003G108401 SORBI_3003G108500 Click to hide this line (andropogoneae) andropogoneae speciation node (click to collapse) andropogoneae Click to hide this line (NAME_0) NAME_0 speciation node (click to collapse) NAME_0 Click to hide this line (zea.mays) zea.mays duplication node (click to collapse) zea.mays Click to hide this line (zea.mays) zea.mays terminal node zea.mays - Chr:2 Zm00001d003184 Zm00001d003185 Zm00001d003186 Zm00001d003187 GRMZM2G051921 (Zm00001d003188) Zm00001d003189 chitinase A1 (Zm00001d003190) Zm00001d003191 Zm00001d003192 Zm00001d003193 Zm00001d003194 double B-box zinc finger protein1 (Zm00001d003195) Zm00001d003196 Zm00001d003197 Zm00001d003198 Zm00001d003200 Zm00001d003202 Zm00001d003203 Zm00001d003205 Zm00001d003207 Zm00001d003208 Zm00001d003209 Zm00001d003210 Zm00001d003211 Zm00001d003212 Zm00001d003213 Zm00001d003214 Zm00001d003216 Zm00001d003217 Zm00001d003218 Click to hide this line (zea.mays) zea.mays terminal node zea.mays - Chr:4 Zm00001d050735 Zm00001d050737 Zm00001d050741 Zm00001d050745 Zm00001d050747 Zm00001d050748 DDT-transcription factor 2 (Zm00001d050753) Zm00001d050754 Zm00001d050755 Zm00001d050757 Zm00001d050758 Zm00001d050764 cytokinin response regulator7 (Zm00001d050768) Zm00001d050770 Zm00001d050771 Zm00001d050775 Zm00001d050776 ARF-transcription factor 14 (Zm00001d050781) Zm00001d050783 Zm00001d050785 AP2-EREBP-transcription factor 32 (Zm00001d050787) Zm00001d050790 Zm00001d050792 Zm00001d050793 Zm00001d050794 Zm00001d050797 Zm00001d050798 Zm00001d050800 Zm00001d050803 Zm00001d050805 Click to hide this line (panicum.hallii.fil2) panicum.hallii.fil2 terminal node panicum.hallii.fil2 - Chr:5 PAHAL_5G437500 PAHAL_5G437600 PAHAL_5G437700 PAHAL_5G437800 PAHAL_5G438000 PAHAL_5G438200 PAHAL_5G438300 PAHAL_5G439300 PAHAL_5G439400 PAHAL_5G439500 PAHAL_5G439800 PAHAL_5G440300 PAHAL_5G440500 Click to hide this line (panicum.hallii.hal2) panicum.hallii.hal2 terminal node panicum.hallii.hal2 - Chr:5 GQ55_5G442400 GQ55_5G442500 GQ55_5G442600 GQ55_5G442700 GQ55_5G442900 GQ55_5G443100 GQ55_5G443200 GQ55_5G444100 GQ55_5G444300 GQ55_5G444600 GQ55_5G445100 GQ55_5G445300 GQ55_5G445400 Click to hide this line (setaria.italica) setaria.italica terminal node setaria.italica - Chr:V SETIT_000972mg SETIT_004089mg SETIT_004608mg SETIT_002481mg SETIT_003865mg SETIT_004421mg SETIT_001068mg SETIT_003667mg SETIT_000190mg SETIT_003118mg SETIT_001211mg SETIT_004265mg SETIT_000090mg SETIT_0016581mg SETIT_003116mg SETIT_003055mg Click to hide this line (setaria.viridis) setaria.viridis terminal node setaria.viridis - Chr:5 SEVIR_5G065380v2 SEVIR_5G065420v2 SEVIR_5G065460v2 SEVIR_5G065500v2 SEVIR_5G065600v2 SEVIR_5G065800v2 SEVIR_5G065901v2 SEVIR_5G066100v2 SEVIR_5G067000v2 SEVIR_5G067100v2 SEVIR_5G067400v2 SEVIR_5G067500v2 SEVIR_5G067600v2 SEVIR_5G068100v2 Click to hide this line (chloridoideae) chloridoideae speciation node (click to collapse) chloridoideae - block_152 Fam000693.a.a.b.b Fam107849.b.a.a.b Fam001059.B Fam122255.B.a.b.g.b Fam116060.B Fam114795.B.a.e.a Fam103599.a.b.b.a Click to hide this line (eragrostis.curvula) eragrostis.curvula duplication node (click to collapse) eragrostis.curvula Click to hide this line (eragrostis.curvula) eragrostis.curvula terminal node eragrostis.curvula - Contig887 EJB05_56532 EJB05_56530 EJB05_56535 EJB05_56527 EJB05_56534 EJB05_56528 EJB05_56548 EJB05_56561 EJB05_56560 EJB05_56545 EJB05_56547 Click to hide this line (eragrostis.curvula) eragrostis.curvula terminal node eragrostis.curvula - Contig25 EJB05_32011 EJB05_32003 EJB05_32013 EJB05_32010 EJB05_32023 EJB05_32022 EJB05_32019 EJB05_32014 EJB05_32040 EJB05_32032 EJB05_32035 EJB05_32034 EJB05_32039 Fam003149 Fam003149 Fam003149 Fam003149 Fam003149 Os01g0101900 ORUFI01G00140 BGIOSGA002565 ORGLA01G0001000 OBART01G00170 OGLUM01G00160 KN538826.1_FG001 OPUNC01G00140 LPERR01G00110 OB01G10140 Fam003149 Fam003149 TRIDC3AG010000 TraesCS3D02G082800 BRADI_2g03640v3 Fam003149 Fam003149 Sspon.03G0018090-1A Fam003149 SORBI_3003G108100 PAHAL_5G438100 GQ55_5G443000 SETIT_005155mg SEVIR_5G066000v2 Fam003149 EJB05_56546 EJB05_32033 Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a ONAC016 (Os01g0104200) ORUFI01G00290 BGIOSGA002593 BGIOSGA002595 OBART01G00330 OGLUM01G00330 KN538826.1_FG011 OPUNC01G00300 BRADI_2g03467v3 Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a Fam122280.a.b.b.b.b.b.b.a.a.b.a.a SORBI_3003G105800 PAHAL_5G440200 GQ55_5G445000 SEVIR_5G068000v2 EJB05_32007 Os01g0103650 Fam105763.d.a.a Fam105763.d.a.a Fam105763.d.a.a Fam105763.d.a.a.c.a Fam105763.d.a.a.c.a Os01g0101300 BGIOSGA002566 ORGLA01G0000500 OBART01G00120 LPERR01G00080 Fam105763.d.a.a BRADI_2g03710v3 Fam105763.d.a.a Fam105763.d.a.a.d ORUFI01G00100 OGLUM01G00120 KN538826.1_FG019 OPUNC01G00090 OB01G10090 Fam103787.a.a.d Fam103787.a.a.d Fam103787.a.a.d Fam103787.a.a.d OsSK4 (Os01g0102600) BGIOSGA002587 ORGLA01G0001500 OBART01G00220 OPUNC01G00180 OB01G10190 Fam103787.a.a.d Fam103787.a.a.d Fam103787.a.a.d TRIDC3AG009900 TraesCS3A02G082700 TRITD3Av1G023690 TRIDC3BG013620 TRITD3Bv1G027790 Fam103787.a.a.d TRITD3Bv1G027790 TraesCS3B02G097800 Fam103787.a.a.d HORVU.MOREX.r2.3HG0192500.1 BRADI_2g03680v3 Fam114444.b.a.b Fam114444.b.a.b Fam114444.b.a.b Fam114444.b.a.b Fam114444.b.a.b OsDjC1 (Os01g0101700) BGIOSGA002582 ORGLA01G0000800 OBART01G00150 OGLUM01G00140 OPUNC01G00110 Fam114444.b.a.b Fam114444.b.a.b BRADI_2g03694v3 Fam114444.b.a.b.f Fam114444.b.a.b.e Sspon.03G0018030-3C Sspon.03G0018030-3C Sspon.03G0018030-2B Fam114444.b.a.b.e SORBI_3003G108600 Fam114444.b.a.b EJB05_32041 Fam002258 Fam002258 Fam002258.c Fam002258.c Fam002258.c LIR1 (Os01g0102900) ORUFI01G00200 BGIOSGA002563 ORGLA01G0001800 OBART01G00240 OGLUM01G00210 KN538826.1_FG010 OPUNC01G00210 LPERR01G00160 Fam002258 Fam002258 Fam002258 Fam002258.a Fam002258.b TRIDC3AG009740 TraesCS3A02G081300 TRITD3Av1G023320 TRIUR3_08454 TRIDC3BG013430 TraesCS3B02G096200 TraesCS3B02G096500 TRITD3Bv1G027360 TRITD3Bv1G027400 Fam002258.a Fam002258.b TRITD3Bv1G027360 TRITD3Bv1G027400 TraesCS3B02G096200 TraesCS3B02G096500 Fam002258 TraesCS3D02G081300 Fam002258 HORVU.MOREX.r2.3HG0192380.1 BRADI_2g03610v3 Fam002258 Fam002258.e Sspon.03G0018130-1P Sspon.03G0018130-3C Sspon.03G0018130-1P Sspon.03G0018130-3C Sspon.03G0018130-1A Sspon.03G0018130-2B Fam002258.e SORBI_3003G107300 Fam002258.f Fam002258.f Zm00001d003199 Zm00001d050774 PAHAL_5G439000 GQ55_5G443800 SETIT_003278mg SEVIR_5G066700v2 Fam002258 EJB05_56529 EJB05_32016 Fam002258.d Fam002258.d OB01G10220 Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Os01g0103000 ORUFI01G00210 BGIOSGA002562 ORGLA01G0001900 OBART01G00250 OGLUM01G00220 KN538826.1_FG005 OPUNC01G00220 LPERR01G00170 OB01G10230 Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b TRIDC3AG009750 TraesCS3A02G081400 TRIDC3BG013470 TraesCS3B02G096400 Fam107867.B.c.a.a.b.b TraesCS3B02G096400 Fam107867.B.c.a.a.b.b TraesCS3D02G081400 Fam107867.B.c.a.a.b.b HORVU.MOREX.r2.3HG0192360.1 BRADI_2g03580v3 Fam107867.B.c.a.a.b.b Fam107867.B.c.a.a.b.b Sspon.03G0018120-3C Sspon.03G0018120-1P Sspon.03G0018120-3C Sspon.03G0018120-1P Sspon.03G0018120-1A Sspon.03G0018120-2B Fam107867.B.c.a.a.b.b SORBI_3003G107200 PAHAL_5G439100 GQ55_5G443900 SETIT_002796mg SEVIR_5G066800v2 Fam107867.B.c.a.a.b.b Fam002492.A Fam002492.A Fam002492.A Fam002492.A OsTLP27 (Os01g0102300) ORUFI01G00160 BGIOSGA002584 ORGLA01G0001200 OBART01G00190 OGLUM01G00180 KN538826.1_FG009 OPUNC01G00160 LPERR01G00130 OB01G10160 Fam002492.A Fam002492.A Fam002492.A TRIDC3AG009950 TRITD3Av1G023820 TRIDC3BG013650 Fam002492.A.b TRITD3Bv1G027850 TraesCS3B02G098000 HORVU.MOREX.r2.3HG0192570.1 Fam002492.B Fam002492.B Fam002492.B.b Sspon.03G0018060-3C Sspon.03G0018060-3C Sspon.03G0018060-1A Fam002492.B.b Fam002492.B.a SORBI_3003G107800 PAHAL_5G438500 GQ55_5G443400 SETIT_002757mg SEVIR_5G066300v2 Fam002492.B EJB05_56562 EJB05_32043 Fam111996.A.d.c.a.b.a.a.b OsHAP5H (Os01g0102400) BGIOSGA002585 ORGLA01G0001300 OBART01G00200 ORUFI01G00170 KN538826.1_FG018 OB01G10170 Fam105875.a Fam105875.a Fam105875.a Fam105875.a.o.b.a Os01g0102500 BGIOSGA002586 LPERR01G00140 Fam105875.a Fam105875.a Fam105875.a TRIDC3AG009920 TraesCS3A02G082800 TRITD3Av1G023700 TRIDC3BG013640 TRITD3Bv1G027800 Fam105875.a TRITD3Bv1G027800 TraesCS3B02G097900 Fam105875.a HORVU.MOREX.r2.3HG0192530.1 BRADI_2g03670v3 Fam105875.a Fam105875.a Fam105875.a SORBI_3003G107700 PAHAL_5G438600 GQ55_5G443500 SETIT_002077mg SEVIR_5G066400v2 Fam105875.a EJB05_56555 EJB05_32038 Fam105875.a.p ORUFI01G00180 ORGLA01G0001400 OBART01G00210 OGLUM01G00190 OPUNC01G00170 OB01G10180 Fam116769.a.b Fam116769.a.b Fam116769.a.b Fam116769.a.b Fam116769.a.b Os01g0101200 BGIOSGA002579 ORGLA01G0000400 LPERR01G00070 OB01G10080 BRADI_2g03713v3 Fam116769.a.b Sspon.03G0018000-1A Fam116769.a.b PAHAL_5G437400 GQ55_5G442300 Fam116769.a.b Fam002265 Fam002265 Fam002265 Fam002265 Fam002265.b Os01g0101800 BGIOSGA002583 ORGLA01G0000900 OBART01G00160 OGLUM01G00150 KN538826.1_FG022 OPUNC01G00130 LPERR01G00100 OB01G10130 Fam002265 Fam002265 TraesCS3D02G082700 BRADI_2g03631v3 Fam002265 Fam002265.d Fam002265.c.a Sspon.03G0035320-2C Sspon.03G0035320-2C Sspon.03G0035320-1B Fam002265.c.a SORBI_3003G108300 PAHAL_5G437900 GQ55_5G442800 SETIT_000471mg SEVIR_5G065700v2 EJB05_32037 Fam002265.a ORUFI01G00130 Os01g0103700 Fam105989 Fam105989 Fam105989 Os01g0103900 LPERR01G00220 TRIDC3BG013260 Fam105989 BRADI_2g03487v3 Fam105989 Fam105989 Sspon.03G0018190-2C Sspon.03G0018190-2C Sspon.03G0018190-1T Fam105989 SORBI_3003G106100 PAHAL_5G439900 GQ55_5G444700 SETIT_003928mg SEVIR_5G067700v2 EJB05_32024 Fam105989.j Fam105989.i.a.a ORUFI01G00260 BGIOSGA002592 ORGLA01G0002400 OBART01G00300 OGLUM01G00280 KN538826.1_FG017 OPUNC01G00270 OB01G10260 Fam115865.c.a Fam115865.c.a Fam115865.c.a Fam115865.c.a Fam115865.c.a Os01g0104000 ORUFI01G00270 BGIOSGA002560 ORGLA01G0002500 OBART01G00310 OGLUM01G00290 KN538826.1_FG002 OPUNC01G00280 LPERR01G00230 OB01G10270 TRIDC3BG013250 BRADI_2g03480v3 Fam115865.c.a Fam115865.c.a Sspon.03G0018200-2C Sspon.03G0018200-2C Sspon.03G0018200-1A Fam115865.c.a SORBI_3003G106000 PAHAL_5G440000 GQ55_5G444800 SETIT_000884mg SEVIR_5G067800v2 EJB05_32015 Fam105013.A.c.g.b.b.b.a.a.a Fam105013.A.c.g.b.b.b.a.a.a OsDET1 (Os01g0104600) ORUFI01G00330 BGIOSGA002558 ORGLA01G0002900 OBART01G00370 OGLUM01G00360 KN538826.1_FG065 Fam105013.A.c.g.b.b.a KN538826.1_FG059 OPUNC01G00330 LPERR01G00290 OB01G10310 Fam103792.a.c.b OsDW1-01g (Os01g0103800) ORUFI01G00250 BGIOSGA002591 ORGLA01G0002300 OBART01G00290 OGLUM01G00270 KN538826.1_FG023 OPUNC01G00260 Fam105250.a.c.a Fam105250.a.c.a Fam105250.a.c.a.c.b.b.a Fam105250.a.c.a.c.b.b.a OsCOIN (Os01g0104100) BGIOSGA002594 ORGLA01G0002600 OBART01G00320 LPERR01G00240 Fam105250.a.c.b Fam105250.a.c.a.c.b.b.b ORUFI01G00280 OGLUM01G00300 KN538826.1_FG006 OPUNC01G00290 OB01G10280 Fam105250.a.c.b Fam105250.a.c.b.b Sspon.03G0018220-1A Fam105250.a.c.b.b SORBI_3003G105900 PAHAL_5G440100 GQ55_5G444900 SETIT_0016582mg SEVIR_5G067900v2 EJB05_32025 Fam103576.A.b.a.a Fam103576.A.b.a.a Fam103576.A.b.a.a Fam103576.A.b.a.a Fam103576.A.b.a.a Os01g0104400 ORUFI01G00310 BGIOSGA002596 ORGLA01G0002800 OBART01G00350 OGLUM01G00340 KN538826.1_FG021 OPUNC01G00310 LPERR01G00260 OB01G10290 BRADI_2g03460v3 Fam103576.A.b.a.a Fam103576.A.b.a.a Sspon.03G0018250-1A Sspon.03G0018250-2B Fam103576.A.b.a.a SORBI_3003G105700 PAHAL_5G440400 GQ55_5G445200 SEVIR_5G068150v2 EJB05_32008 Os01g0103400 Os01g0103075 Fam001524.a Fam001524.a Fam001524.a Fam001524.a Fam001524.a.b Os01g0101600 BGIOSGA002581 ORGLA01G0000700 OBART01G00140 OGLUM01G00130 KN538826.1_FG014 OPUNC01G00100 LPERR01G00090 OB01G10100 Fam001524.a BRADI_2g03701v3 Fam001524.a.d Sspon.03G0018020-3C Sspon.03G0018020-3C Fam001524.a.d SORBI_3003G108700 Fam001524.a Fam001524.a.a ORUFI01G00120 Os01g0102850 Fam115453.A.b.d Fam115453.A.b.d Fam115453.A.b.d Fam115453.A.b.d CSB (Os01g0102800) ORGLA01G0001700 OBART01G00230 OGLUM01G00200 KN538826.1_FG016 OPUNC01G00200 LPERR01G00150 OB01G10210 Fam115453.A.b.d Fam115453.A.b.d Fam115453.A.b.d Fam115453.A.b.d TRIDC3AG009780 TraesCS3A02G081900 TRITD3Av1G023460 TRIDC3BG013530 TraesCS3B02G097000 TRITD3Bv1G027490 Fam115453.A.b.d TRITD3Bv1G027490 TraesCS3B02G097000 TraesCS3D02G082200 Fam115453.A.b.d HORVU.MOREX.r2.3HG0192470.1 BRADI_2g03617v3 Fam115453.A.b.d Fam115453.A.b.d.e Sspon.03G0018140-1P Sspon.03G0018140-3C Sspon.03G0018140-1P Sspon.03G0018140-3C Sspon.03G0018140-1A Sspon.03G0018140-2B Fam115453.A.b.d.e SORBI_3003G107500 PAHAL_5G438900 GQ55_5G443700 SETIT_000085mg SEVIR_5G066600v2 Fam115453.A.b.d EJB05_56533 EJB05_32021 Fam115453.A.b.d.d ORUFI01G00190 BGIOSGA002588 Os01g0102700 Fam105045.a.a Fam105045.a.a Fam105045.a.a ORGLA01G0001600 OPUNC01G00190 OB01G10200 Fam105045.a.a Fam105045.a.a Fam105045.a.a Fam105045.a.a TRIDC3AG009800 TraesCS3A02G082100 TRITD3Av1G023500 TRIDC3BG013550 TraesCS3B02G097200 TRITD3Bv1G027660 Fam105045.a.a TRITD3Bv1G027660 TraesCS3B02G097200 TraesCS3D02G082300 Fam105045.a.a HORVU.MOREX.r2.3HG0192480.1 BRADI_2g03687v3 Fam116189.A Fam116189.A Fam116189.A Fam116189.A.e.a Fam116189.A.e.a Os01g0103100 BGIOSGA002589 ORGLA01G0002000 OBART01G00260 OGLUM01G00230 LPERR01G00180 Fam116189.A Fam116189.A Fam116189.A TRIDC3AG009710 TraesCS3A02G081100 TRITD3Av1G023240 TRIDC3BG013400 TraesCS3B02G095900 TRITD3Bv1G027250 Fam116189.A TRITD3Bv1G027250 TraesCS3B02G095900 TraesCS3D02G081100 Fam116189.A HORVU.MOREX.r2.3HG0192310.1 BRADI_2g03560v3 Fam116189.A Fam116189.A Fam116189.A SORBI_3003G107100 PAHAL_5G439200 GQ55_5G444000 SETIT_000601mg SEVIR_5G066900v2 Fam116189.A EJB05_56531 EJB05_32020 ORUFI01G00220 KN538826.1_FG008 OPUNC01G00230 OB01G10240 Fam104480.A.a.a.e.a.a Fam104480.A.a.a.e.a.a Fam104480.A.a.a.e.a.a Fam104480.A.a.a.e.a.a.c.a Fam104480.A.a.a.e.a.a.c.a.a Os01g0103600 BGIOSGA002561 ORGLA01G0002100 LPERR01G00200 Fam104480.A.a.a.e.a.a Fam104480.A.a.a.e.a.a.a Sspon.03G0018170-3C Sspon.03G0018170-3C Sspon.03G0018170-1T Sspon.03G0018170-2B Fam104480.A.a.a.e.a.a.b SORBI_3003G106600 SORBI_3003G106800 PAHAL_5G439600 GQ55_5G444400 SETIT_002887mg SEVIR_5G067200v2 Fam104480.A.a.a.e.a.a.h.a Fam104480.A.a.a.e.a.a.g EJB05_32017 EJB05_32018 Fam104480.A.a.a.e.b ORUFI01G00230 OBART01G00270 OGLUM01G00250 OPUNC01G00240 Fam104480.A.a.a.e.a.b.a.a.b TRIDC3BG013320 TraesCS3B02G094700 TRITD3Bv1G026510 TRITD3Bv1G026510 TraesCS3D02G079800 Fam104480.A.a.a.e.a.b.a.a.b BRADI_2g03530v3 Fam104480.A.a.a.e.b Fam104480.A.a.a.e.a.b Fam104480.A.a.a.e.a.b.d Fam104480.A.a.a.e.a.b.c.a Fam104480.A.a.a.e.b Sspon.03G0018160-3C Sspon.03G0018160-3C Sspon.03G0018150-1A Sspon.03G0018160-2B Sspon.03G0035350-1B Fam104480.A.a.a.e.b Fam104480.A.a.a.e.a.b.d SORBI_3003G106300 SORBI_3003G106400 SORBI_3003G107400 SORBI_3003G107600 PAHAL_5G438700 PAHAL_5G439700 GQ55_5G443600 GQ55_5G444500 SETIT_002890mg SETIT_004713mg SEVIR_5G066500v2 SEVIR_5G067300v2 Fam104480.A.a.a.e.b EJB05_56542 EJB05_32030 Os01g0101850 Fam103544.b.a.b.a.a.a.b Fam103544.b.a.b.a.a.a.b Fam103544.b.a.b.a.a.a.b.b OsNPC6 (Os01g0102000) BGIOSGA002564 ORGLA01G0001100 OBART01G00180 OGLUM01G00170 KN538826.1_FG015 OPUNC01G00150 LPERR01G00120 OB01G10150 Fam103544.b.a.b.a.a.a.a Fam103544.b.a.b.a.a.a.a ORUFI01G00150 Fam103544.b.a.b.a.a.a.a Fam103544.b.a.b.a.a.a.a Fam103544.b.a.b.a.a.a.a TRIDC3AG009960 TRIDC3BG013660 Fam103544.b.a.b.a.a.a.a BRADI_2g03657v3 Fam103544.b.a.b.a.a.a.a Fam103544.b.a.b.a.a.a.a Sspon.03G0018070-1A Sspon.03G0018070-2B Fam103544.b.a.b.a.a.a.a SORBI_3003G107900 PAHAL_5G438400 GQ55_5G443300 SETIT_005131mg SEVIR_5G066200v2 Fam103544.b.a.b.a.a.a.a EJB05_56539 EJB05_32029 Fam125234.A.b.b.b.b.a.a.a.a.b.i.b Fam125234.A.b.b.b.b.a.a.a.a.b.i.b.a.b Fam125234.A.b.b.b.b.a.a.a.a.b.i.b.a.b ONAC020 (Os01g0104500) ORUFI01G00320 BGIOSGA002597 OBART01G00360 OGLUM01G00350 KN538826.1_FG063 LPERR01G00270 Fam125234.A.b.b.b.b.a.b.a Fam125234.A.b.b.b.b.a.b.a OPUNC01G00320 OB01G10300 BRADI_2g03448v3 Fam125234.A.b.b.b.b.a.b.a.g Fam125234.A.b.b.b.b.a.b.a.g.b.a.b.a Sspon.03G0018260-1A Fam125234.A.b.b.b.b.a.b.a.g.b.a.b.a EJB05_32012