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Root species for NRXN1 (ENSSSAG00000004275) (Atlantic salmon) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
812 homologs (oldest homol.) ![]() |
Vertebrata | ![]() |
389 species ![]() |
809 homologs (dupl. node) ![]() 793 homologs (dupl. node) ![]() 651 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
648 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
642 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
242 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
237 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
235 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
226 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
168 homologs (dupl. node) ![]() 139 homologs ![]() |
Protacanthopterygii | ![]() |
13 species ![]() |
40 homologs ![]() |
Salmoninae | ![]() |
11 species ![]() |
38 homologs (dupl. node) ![]() 36 homologs (dupl. node) ![]() 26 homologs (dupl. node) ![]() 15 homologs ![]() |
Salmoninae_a | ![]() |
9 species ![]() |
9 homologs ![]() |
Salmo | ![]() |
3 species ![]() |
3 homologs ![]() |
Atlantic salmon | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'