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Root species for NSA2 (ENSLLTG00000016127) (Blue-lipped sea krait) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
827 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
825 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
821 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
818 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
815 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
813 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
656 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
654 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
648 homologs ![]() |
Sauria | ![]() |
53 species ![]() |
60 homologs ![]() |
Lepidosauria | ![]() |
15 species ![]() |
22 homologs ![]() |
Episquamata | ![]() |
13 species ![]() |
20 homologs ![]() |
Toxicofera | ![]() |
9 species ![]() |
9 homologs ![]() |
Elapidae | ![]() |
7 species ![]() |
7 homologs ![]() |
Elapidae_a | ![]() |
5 species ![]() |
5 homologs ![]() |
Blue-lipped sea krait | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'