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Root species for FZD8 (ENSCAFG00020000760) (Dingo) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
654 homologs (oldest homol. - dupl. node) ![]() 491 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
487 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
485 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
212 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
210 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
206 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
159 homologs ![]() |
Theria | ![]() |
191 species ![]() |
157 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
148 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
141 homologs ![]() |
Laurasiatheria | ![]() |
75 species ![]() |
62 homologs ![]() |
Laurasiatheria_a | ![]() |
71 species ![]() |
61 homologs ![]() |
Laurasiatheria_b | ![]() |
33 species ![]() |
27 homologs ![]() |
Carnivora | ![]() |
23 species ![]() |
19 homologs ![]() |
Caniformia | ![]() |
15 species ![]() |
12 homologs ![]() |
Canidae | ![]() |
5 species ![]() |
5 homologs ![]() |
Canis_lupus | ![]() |
3 species ![]() |
3 homologs ![]() |
Dingo | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'