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Root species for th2 (ENSOMYG00000022464) (Rainbow trout) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
1961 homologs (oldest homol. - dupl. node) ![]() 1035 homologs (dupl. node) ![]() 608 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
604 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
600 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
596 homologs (dupl. node) ![]() 218 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
216 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
148 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
146 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
145 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
141 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
114 homologs ![]() |
Protacanthopterygii | ![]() |
13 species ![]() |
24 homologs ![]() |
Salmoninae | ![]() |
11 species ![]() |
22 homologs (dupl. node) ![]() 11 homologs ![]() |
Salmoninae_a | ![]() |
9 species ![]() |
9 homologs ![]() |
Oncorhynchus | ![]() |
5 species ![]() |
5 homologs ![]() |
Rainbow trout | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'