Root species for Fam008797 (11_Ciona) | AlignView depth | PhyloView depth | |
---|---|---|---|
34_Deuterostomia | ![]() |
33 species ![]() |
|
30_Chordata | ![]() |
29 species ![]() |
|
28 | ![]() |
27 species ![]() |
|
16_Ascidiacea | ![]() |
17 species ![]() |
12 homologs (oldest homol.) ![]() |
15_Phlebobranchia | ![]() |
7 species ![]() |
3 homologs ![]() |
11_Ciona | ![]() |
3 species ![]() |
2 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'