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Root species for mdh2 (ENSMMDG00005022904) (Pinecone sodierfish) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
525 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
523 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
515 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
511 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
507 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
505 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
169 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
167 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
165 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
151 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
117 homologs ![]() |
Acanthomorphata | ![]() |
87 species ![]() |
85 homologs ![]() |
Euacanthomorphacea | ![]() |
85 species ![]() |
84 homologs ![]() |
Pinecone sodierfish | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'