Root species for gstt1b (ENSMZEG00005001411) (Zebra mbuna) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 471 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 468 homologs |
Vertebrata | ~550 Mya | 389 species | 464 homologs |
Gnathostomata | ~473 Mya | 385 species | 456 homologs |
Euteleostomi | ~420 Mya | 383 species | 454 homologs |
Actinopterygii | ~386 Mya | 129 species | 276 homologs |
Neopterygii | ~314 Mya | 127 species | 274 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 270 homologs (dupl. node) 123 homologs |
Clupeocephala | ~229 Mya | 121 species | 117 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 86 homologs |
Acanthomorphata | ~148 Mya | 87 species | 68 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 66 homologs |
Percomorphaceae | ~128 Mya | 83 species | 65 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 64 homologs |
Ovalentaria | ~128 Mya | 45 species | 39 homologs |
Ovalentaria_B | ~128 Mya | 21 species | 19 homologs |
Cichlidae | ~95 Mya | 13 species | 18 homologs |
Pseudocrenilabrinae | ~22 Mya | 11 species | 16 homologs |
Pseudocrenilabrinae_A | ~22 Mya | 9 species | 14 homologs |
Haplochromini | ~6 Mya | 7 species | 12 homologs (dupl. node) 6 homologs |
Haplochromini_A | ~6 Mya | 5 species | 4 homologs |
Haplochromini_B | ~5 Mya | 3 species | 3 homologs |
Zebra mbuna | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'