Root species for olig4 (ENSPKIG00000007143) (P. kingsleyae) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | |
Gnathostomata | ~473 Mya | 385 species | |
Euteleostomi | ~420 Mya | 383 species | 159 homologs (oldest homol.) |
Actinopterygii | ~386 Mya | 129 species | 147 homologs |
Neopterygii | ~314 Mya | 127 species | 145 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 143 homologs |
Osteoglossiformes | ~163 Mya | 3 species | 3 homologs |
P. kingsleyae | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'