Root species for RYBP (ENSSTOG00000000185) (Squirrel) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1069 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 1065 homologs (dupl. node) 1038 homologs (dupl. node) 464 homologs |
Vertebrata | ~550 Mya | 389 species | 463 homologs |
Gnathostomata | ~473 Mya | 385 species | 459 homologs |
Euteleostomi | ~420 Mya | 383 species | 457 homologs |
Sarcopterygii | ~400 Mya | 253 species | 263 homologs |
Tetrapoda | ~359 Mya | 251 species | 261 homologs |
Amniota | ~326 Mya | 247 species | 257 homologs |
Mammalia | ~184 Mya | 193 species | 203 homologs |
Theria | ~166 Mya | 191 species | 199 homologs |
Eutheria | ~102 Mya | 181 species | 190 homologs |
Boreoeutheria | ~95 Mya | 171 species | 180 homologs |
Euarchontoglires | ~90 Mya | 95 species | 100 homologs |
Euarchontoglires_A | ~90 Mya | 47 species | 53 homologs |
Glires | ~81 Mya | 45 species | 51 homologs |
Rodentia | ~80 Mya | 41 species | 47 homologs |
Rodentia_A | ~80 Mya | 15 species | 17 homologs |
Sciuridae | ~34 Mya | 7 species | 7 homologs |
Marmotini | ~7 Mya | 5 species | 5 homologs |
Marmotini_b | ~7 Mya | 3 species | 3 homologs |
Squirrel | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'