Root species for ENSGFOG00000006733 (Medium ground finch) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | 2702 homologs (oldest homol. - dupl. node) 2304 homologs |
Gnathostomata | ~473 Mya | 385 species | 2301 homologs |
Euteleostomi | ~420 Mya | 383 species | 2300 homologs (dupl. node) 1411 homologs (dupl. node) 410 homologs |
Sarcopterygii | ~400 Mya | 253 species | 185 homologs |
Tetrapoda | ~359 Mya | 251 species | 175 homologs |
Amniota | ~326 Mya | 247 species | 137 homologs |
Sauria | ~267 Mya | 53 species | 129 homologs |
Archelosauria | ~250 Mya | 37 species | 62 homologs |
Archosauria | ~236 Mya | 27 species | 52 homologs |
Aves | ~111 Mya | 25 species | 50 homologs (dupl. node) 25 homologs |
Neognathae | ~105 Mya | 23 species | 24 homologs |
Neognathae_b | ~105 Mya | 13 species | 23 homologs |
Passeriformes | ~65 Mya | 9 species | 22 homologs (dupl. node) 17 homologs |
Passeriformes_d | ~65 Mya | 7 species | 15 homologs |
Passeriformes_g | ~42 Mya | 5 species | 11 homologs |
Medium ground finch | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'