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Root species for ENSGFOG00000006733 (Medium ground finch) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
2702 homologs (oldest homol. - dupl. node) ![]() 2304 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
2301 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
2300 homologs (dupl. node) ![]() 1411 homologs (dupl. node) ![]() 410 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
185 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
175 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
137 homologs ![]() |
Sauria | ![]() |
53 species ![]() |
129 homologs ![]() |
Archelosauria | ![]() |
37 species ![]() |
62 homologs ![]() |
Archosauria | ![]() |
27 species ![]() |
52 homologs ![]() |
Aves | ![]() |
25 species ![]() |
50 homologs (dupl. node) ![]() 25 homologs ![]() |
Neognathae | ![]() |
23 species ![]() |
24 homologs ![]() |
Neognathae_b | ![]() |
13 species ![]() |
23 homologs ![]() |
Passeriformes | ![]() |
9 species ![]() |
22 homologs (dupl. node) ![]() 17 homologs ![]() |
Passeriformes_d | ![]() |
7 species ![]() |
15 homologs ![]() |
Passeriformes_g | ![]() |
5 species ![]() |
11 homologs ![]() |
Medium ground finch | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'