Root species for FAM168A (ENSBTAG00000016497) (Cow) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 128 species | |
Bilateria | ~580 Mya | 126 species | |
Olfactores | ~550 Mya | 122 species | |
Craniata | ~550 Mya | 118 species | |
Euteleostomi | ~420 Mya | 116 species | 238 homologs (oldest homol. - dupl. node) 116 homologs |
Sarcopterygii | ~400 Mya | 94 species | 92 homologs |
Tetrapoda | ~359 Mya | 92 species | 90 homologs |
Amniota | ~326 Mya | 90 species | 88 homologs |
Mammalia | ~184 Mya | 76 species | 75 homologs |
Theria | ~166 Mya | 74 species | 73 homologs |
Eutheria | ~102 Mya | 68 species | 67 homologs |
Boreoeutheria | ~95 Mya | 59 species | 58 homologs |
Laurasiatheria | ~88 Mya | 22 species | 22 homologs |
Cetartiodactyla | ~61 Mya | 7 species | 7 homologs |
Bovidae | ~30 Mya | 3 species | 3 homologs |
Cow | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'