GenomicusProtists v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PKH_080900 (Plasmodium knowlesi strain H)	AlignView depth	PhyloView depth
Eukaryota	200 species	690 homologs (oldest homol. - dupl. node) 341 homologs (dupl. node) 185 homologs (dupl. node) 138 homologs (dupl. node) 114 homologs (dupl. node) 98 homologs (dupl. node) 35 homologs
Alveolata	77 species	34 homologs (dupl. node) 20 homologs
Apicomplexa	62 species	19 homologs
Aconoidasida	36 species	18 homologs
Plasmodium	25 species	17 homologs
Plasmodium Plasmodium	9 species	9 homologs
Plasmodium knowlesi strain H	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'