Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for NOG (ENSSBOG00000006250) (Bolivian squirrel monkey)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species	959 homologs (oldest homol.)
Vertebrata	~550 Mya	389 species	955 homologs (dupl. node) 775 homologs (dupl. node) 772 homologs (dupl. node) 533 homologs
Gnathostomata	~473 Mya	385 species	532 homologs
Euteleostomi	~420 Mya	383 species	530 homologs
Sarcopterygii	~400 Mya	253 species	236 homologs
Tetrapoda	~359 Mya	251 species	234 homologs
Amniota	~326 Mya	247 species	230 homologs
Mammalia	~184 Mya	193 species	180 homologs
Theria	~166 Mya	191 species	179 homologs
Eutheria	~102 Mya	181 species	170 homologs
Boreoeutheria	~95 Mya	171 species	162 homologs
Euarchontoglires	~90 Mya	95 species	91 homologs
Primates	~83 Mya	47 species	45 homologs
Haplorrhini	~57 Mya	39 species	37 homologs
Simiiformes	~45 Mya	37 species	35 homologs
Platyrrhini	~18 Mya	7 species	7 homologs
Cebidae	~18 Mya	5 species	5 homologs
Cebidae_a	~18 Mya	3 species	3 homologs
Bolivian squirrel monkey	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'