Root species for ENSGT00390000016928.c (Gobiidae) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 490 species | |
Bilateria | ~580 Mya | 488 species | 656 homologs (oldest homol.) |
Chordata | ~550 Mya | 484 species | 653 homologs |
Vertebrata | ~550 Mya | 480 species | 648 homologs |
Gnathostomata | ~473 Mya | 476 species | 640 homologs |
Euteleostomi | ~420 Mya | 474 species | 638 homologs |
Actinopterygii | ~386 Mya | 153 species | 325 homologs |
Neopterygii | ~314 Mya | 151 species | 323 homologs |
Osteoglossocephalai | ~267 Mya | 149 species | 321 homologs (dupl. node) 166 homologs |
Clupeocephala | ~229 Mya | 145 species | 165 homologs |
Euteleosteomorpha | ~206 Mya | 119 species | 129 homologs |
Acanthomorphata | ~148 Mya | 107 species | 107 homologs |
Euacanthomorphacea | ~132 Mya | 105 species | 105 homologs |
Percomorphaceae | ~128 Mya | 103 species | 103 homologs |
Percomorphaceae_A | ~110 Mya | 101 species | 101 homologs |
Gobiaria | ~86 Mya | 5 species | 5 homologs |
Gobiidae | ~56 Mya | 3 species | 3 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'