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Root species for ENSSHBG00005020595 (Kakapo) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
816 homologs (oldest homol.) ![]() |
Chordata | ![]() |
393 species ![]() |
813 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
810 homologs (dupl. node) ![]() 806 homologs (dupl. node) ![]() 386 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
383 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
381 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
293 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
291 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
285 homologs ![]() |
Sauria | ![]() |
53 species ![]() |
49 homologs ![]() |
Archelosauria | ![]() |
37 species ![]() |
34 homologs ![]() |
Archosauria | ![]() |
27 species ![]() |
24 homologs ![]() |
Aves | ![]() |
25 species ![]() |
22 homologs ![]() |
Neognathae | ![]() |
23 species ![]() |
20 homologs ![]() |
Neognathae_b | ![]() |
13 species ![]() |
11 homologs ![]() |
Neognathae_c | ![]() |
3 species ![]() |
3 homologs ![]() |
Kakapo | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'