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Root species for ccn1l2 (ENSSMAG00000018753) (Turbot) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
743 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
385 species ![]() |
737 homologs (dupl. node) ![]() 183 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
182 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
176 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
175 homologs (dupl. node) ![]() 169 homologs (dupl. node) ![]() 121 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
120 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
116 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
90 homologs ![]() |
Acanthomorphata | ![]() |
87 species ![]() |
63 homologs ![]() |
Euacanthomorphacea | ![]() |
85 species ![]() |
62 homologs ![]() |
Percomorphaceae | ![]() |
83 species ![]() |
60 homologs ![]() |
Percomorphaceae_B | ![]() |
81 species ![]() |
58 homologs ![]() |
Percomorphaceae_C | ![]() |
35 species ![]() |
30 homologs ![]() |
Percomorphaceae_D | ![]() |
15 species ![]() |
13 homologs ![]() |
Carangaria | ![]() |
9 species ![]() |
8 homologs ![]() |
Pleuronectoidei | ![]() |
3 species ![]() |
2 homologs ![]() |
Turbot | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'