GenomicusMetazoa v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for CPIJ004713 (Culex quinquefasciatus)	AlignView depth	PhyloView depth
Metazoa	198 species
Eumetazoa	196 species
Bilateria	187 species
Protostomia	182 species	216 homologs (oldest homol. - dupl. node) 196 homologs (dupl. node) 187 homologs
Ecdysozoa	167 species	175 homologs
Arthropoda	150 species	174 homologs (dupl. node) 160 homologs (dupl. node) 138 homologs
Mandibulata	134 species	133 homologs
Pancrustacea	132 species	132 homologs
Hexapoda	124 species	127 homologs
Neoptera	120 species	126 homologs (dupl. node) 108 homologs
Holometabola	109 species	106 homologs (dupl. node) 98 homologs (dupl. node) 49 homologs
Diptera	87 species	44 homologs
Nematocera	49 species	43 homologs
Culicomorpha	44 species	42 homologs
Culicidae	40 species	41 homologs
Culicinae	5 species	11 homologs
Culex quinquefasciatus	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'