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Root species for ATP6V0D1 (ENSODEG00000016167) (Degu) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
490 species ![]() |
1015 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
488 species ![]() |
1013 homologs (dupl. node) ![]() 987 homologs (dupl. node) ![]() 541 homologs ![]() |
Chordata | ![]() |
484 species ![]() |
536 homologs ![]() |
Vertebrata | ![]() |
480 species ![]() |
535 homologs ![]() |
Gnathostomata | ![]() |
476 species ![]() |
531 homologs ![]() |
Euteleostomi | ![]() |
474 species ![]() |
529 homologs ![]() |
Sarcopterygii | ![]() |
320 species ![]() |
346 homologs ![]() |
Tetrapoda | ![]() |
318 species ![]() |
344 homologs ![]() |
Amniota | ![]() |
316 species ![]() |
342 homologs ![]() |
Mammalia | ![]() |
200 species ![]() |
223 homologs ![]() |
Theria | ![]() |
198 species ![]() |
221 homologs ![]() |
Eutheria | ![]() |
188 species ![]() |
206 homologs ![]() |
Boreoeutheria | ![]() |
178 species ![]() |
198 homologs ![]() |
Euarchontoglires | ![]() |
106 species ![]() |
120 homologs ![]() |
Glires | ![]() |
51 species ![]() |
59 homologs ![]() |
Rodentia | ![]() |
47 species ![]() |
55 homologs ![]() |
Hystricomorpha | ![]() |
11 species ![]() |
13 homologs ![]() |
Hystricomorpha_a | ![]() |
7 species ![]() |
7 homologs ![]() |
Hystricomorpha_b | ![]() |
3 species ![]() |
3 homologs ![]() |
Degu | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'