Root species for EEF1G (ENSBMSG00010007952) (Blue whale) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 602 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 598 homologs |
Vertebrata | ~550 Mya | 389 species | 591 homologs |
Gnathostomata | ~473 Mya | 385 species | 587 homologs |
Euteleostomi | ~420 Mya | 383 species | 585 homologs |
Sarcopterygii | ~400 Mya | 253 species | 418 homologs |
Tetrapoda | ~359 Mya | 251 species | 414 homologs |
Amniota | ~326 Mya | 247 species | 408 homologs |
Mammalia | ~184 Mya | 193 species | 359 homologs |
Theria | ~166 Mya | 191 species | 357 homologs |
Eutheria | ~102 Mya | 181 species | 345 homologs |
Boreoeutheria | ~95 Mya | 171 species | 335 homologs (dupl. node) 306 homologs |
Laurasiatheria | ~88 Mya | 75 species | 101 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 97 homologs |
Artiodactyla | ~61 Mya | 37 species | 45 homologs |
Artiodactyla_a | ~61 Mya | 33 species | 39 homologs |
Artiodactyla_b | ~61 Mya | 29 species | 36 homologs |
Cetacea | ~34 Mya | 11 species | 12 homologs |
Blue whale | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'