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Root species for ENSGT00910000147192 (Macaca_a) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
490 species ![]() |
|
Bilateria | ![]() |
488 species ![]() |
|
Chordata | ![]() |
484 species ![]() |
|
Vertebrata | ![]() |
480 species ![]() |
|
Gnathostomata | ![]() |
476 species ![]() |
|
Euteleostomi | ![]() |
474 species ![]() |
|
Sarcopterygii | ![]() |
320 species ![]() |
|
Tetrapoda | ![]() |
318 species ![]() |
|
Amniota | ![]() |
316 species ![]() |
|
Mammalia | ![]() |
200 species ![]() |
|
Theria | ![]() |
198 species ![]() |
|
Eutheria | ![]() |
188 species ![]() |
|
Boreoeutheria | ![]() |
178 species ![]() |
|
Euarchontoglires | ![]() |
106 species ![]() |
|
Primates | ![]() |
53 species ![]() |
|
Haplorrhini | ![]() |
45 species ![]() |
|
Simiiformes | ![]() |
43 species ![]() |
|
Catarrhini | ![]() |
35 species ![]() |
22 homologs (oldest homol.) ![]() |
Cercopithecidae | ![]() |
23 species ![]() |
19 homologs ![]() |
Cercopithecinae | ![]() |
15 species ![]() |
12 homologs ![]() |
Cercopithecinae_a | ![]() |
13 species ![]() |
11 homologs ![]() |
Macaca | ![]() |
5 species ![]() |
4 homologs ![]() |
Macaca_a | ![]() |
3 species ![]() |
2 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'