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Genomicus v100.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 100.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for ENSGT00910000147192 (Macaca_a) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 490 species
Bilateria Bilateria ~580 Mya 488 species
Chordata Chordata ~550 Mya 484 species
Vertebrata Vertebrata ~550 Mya 480 species
Gnathostomata Gnathostomata ~473 Mya 476 species
Euteleostomi Euteleostomi ~420 Mya 474 species
Sarcopterygii Sarcopterygii ~400 Mya 320 species
Tetrapoda Tetrapoda ~359 Mya 318 species
Amniota Amniota ~326 Mya 316 species
Mammalia Mammalia ~184 Mya 200 species
Theria Theria ~166 Mya 198 species
Eutheria Eutheria ~102 Mya 188 species
Boreoeutheria Boreoeutheria ~95 Mya 178 species
Euarchontoglires Euarchontoglires ~90 Mya 106 species
Primates Primates ~83 Mya 53 species
Haplorrhini Haplorrhini ~57 Mya 45 species
Simiiformes Simiiformes ~45 Mya 43 species
Catarrhini Catarrhini ~30 Mya 35 species 22 homologs (oldest homol.)
Cercopithecidae Cercopithecidae ~19 Mya 23 species 19 homologs
Cercopithecinae Cercopithecinae ~13 Mya 15 species 12 homologs
Cercopithecinae_a Cercopithecinae_a ~13 Mya 13 species 11 homologs
Macaca Macaca ~5 Mya 5 species 4 homologs
Macaca_a Macaca_a ~5 Mya 3 species 2 homologs

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'