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Root species for FAM50A (ENSBGRG00000024395) (Domestic yak) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
616 homologs (oldest homol. - dupl. node) ![]() 370 homologs (dupl. node) ![]() 224 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
223 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
222 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
221 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
219 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
213 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
212 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
211 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
199 homologs ![]() |
Theria | ![]() |
191 species ![]() |
198 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
197 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
196 homologs ![]() |
Laurasiatheria | ![]() |
75 species ![]() |
89 homologs ![]() |
Laurasiatheria_a | ![]() |
71 species ![]() |
86 homologs ![]() |
Artiodactyla | ![]() |
37 species ![]() |
51 homologs ![]() |
Artiodactyla_a | ![]() |
33 species ![]() |
47 homologs ![]() |
Artiodactyla_b | ![]() |
29 species ![]() |
44 homologs ![]() |
Pecora | ![]() |
17 species ![]() |
21 homologs ![]() |
Percora_a | ![]() |
15 species ![]() |
17 homologs ![]() |
Bovidae | ![]() |
13 species ![]() |
13 homologs ![]() |
Bovinae | ![]() |
9 species ![]() |
9 homologs ![]() |
Bos | ![]() |
7 species ![]() |
7 homologs ![]() |
Bos_a | ![]() |
3 species ![]() |
3 homologs ![]() |
Domestic yak | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'