Genomicus v103.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPS9 (ENSPLOG00000021914) (lion)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	396 species	502 homologs (oldest homol.)
Bilateria	~580 Mya	394 species	498 homologs
Chordata	~550 Mya	390 species	494 homologs
Vertebrata	~550 Mya	386 species	490 homologs
Gnathostomata	~473 Mya	382 species	486 homologs
Euteleostomi	~420 Mya	380 species	485 homologs
Sarcopterygii	~400 Mya	250 species	337 homologs
Tetrapoda	~359 Mya	248 species	335 homologs
Amniota	~326 Mya	244 species	332 homologs
Mammalia	~184 Mya	190 species	280 homologs
Theria	~166 Mya	188 species	278 homologs
Eutheria	~102 Mya	178 species	270 homologs
Boreoeutheria	~95 Mya	168 species	261 homologs
Laurasiatheria	~88 Mya	75 species	97 homologs
Laurasiatheria_a	~77 Mya	71 species	92 homologs
Laurasiatheria_b	~77 Mya	33 species	46 homologs
Carnivora	~56 Mya	23 species	35 homologs
Felidae	~15 Mya	7 species	7 homologs
Panthera	~7 Mya	5 species	5 homologs
Panthera_a	~7 Mya	3 species	3 homologs
lion	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here