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Root species for SUMO3 (ENSCJPG00005005478) (Japanese quail) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
2641 homologs (oldest homol.) ![]() |
Chordata | ![]() |
393 species ![]() |
2638 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
2634 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
2631 homologs (dupl. node) ![]() 2366 homologs (dupl. node) ![]() 748 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
744 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
368 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
364 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
358 homologs ![]() |
Sauria | ![]() |
53 species ![]() |
55 homologs ![]() |
Archelosauria | ![]() |
37 species ![]() |
36 homologs ![]() |
Archosauria | ![]() |
27 species ![]() |
24 homologs ![]() |
Aves | ![]() |
25 species ![]() |
22 homologs ![]() |
Neognathae | ![]() |
23 species ![]() |
18 homologs ![]() |
Galloanserae | ![]() |
9 species ![]() |
9 homologs ![]() |
Phasianidae | ![]() |
5 species ![]() |
6 homologs ![]() |
Japanese quail | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'