Root species for TRAF6 (ENSSPUG00000019081) (tuatara) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 444 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 441 homologs |
Vertebrata | ~550 Mya | 389 species | 435 homologs |
Gnathostomata | ~473 Mya | 385 species | 431 homologs |
Euteleostomi | ~420 Mya | 383 species | 429 homologs |
Sarcopterygii | ~400 Mya | 253 species | 277 homologs |
Tetrapoda | ~359 Mya | 251 species | 275 homologs |
Amniota | ~326 Mya | 247 species | 271 homologs |
Sauria | ~267 Mya | 53 species | 53 homologs |
Lepidosauria | ~251 Mya | 15 species | 15 homologs |
tuatara | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'