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Root species for ENSGT00940000166656.D.a.a.a.a.a.a.b.a.b (Acanthomorphata) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
824 homologs (oldest homol. - dupl. node) ![]() 757 homologs (dupl. node) ![]() 733 homologs (dupl. node) ![]() 673 homologs (dupl. node) ![]() 636 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
633 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
631 homologs (dupl. node) ![]() 525 homologs (dupl. node) ![]() 404 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
399 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
398 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
397 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
396 homologs (dupl. node) ![]() 334 homologs (dupl. node) ![]() 251 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
250 homologs (dupl. node) ![]() 66 homologs (dupl. node) ![]() 58 homologs (dupl. node) ![]() 46 homologs (dupl. node) ![]() 37 homologs (dupl. node) ![]() 27 homologs ![]() |
Acanthomorphata | ![]() |
87 species ![]() |
17 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'