GenomicusFungi v43.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for JAAARDRAFT_52309 (Jaapia argillacea MUCL 33604)		AlignView depth	PhyloView depth
Fungi	~10 Mya	713 species
Dikarya	~10 Mya	634 species
Basidiomycota	~10 Mya	190 species
Agaricomycotina	~10 Mya	134 species
Agaricomycetes	~10 Mya	106 species
Agaricomycetidae	~10 Mya	56 species
Jaapia argillacea MUCL 33604	~0 Mya	1 species	2 homologs (oldest homol. - dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'