Root species for POLD2 (ENSPTIG00000018542) (Tiger) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
350 species ![]() |
364 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
348 species ![]() |
362 homologs ![]() |
Chordata | ![]() |
344 species ![]() |
358 homologs ![]() |
Vertebrata | ![]() |
340 species ![]() |
355 homologs ![]() |
Euteleostomi | ![]() |
336 species ![]() |
351 homologs ![]() |
Sarcopterygii | ![]() |
240 species ![]() |
248 homologs ![]() |
Tetrapoda | ![]() |
238 species ![]() |
246 homologs ![]() |
Amniota | ![]() |
236 species ![]() |
244 homologs ![]() |
Mammalia | ![]() |
168 species ![]() |
179 homologs ![]() |
Theria | ![]() |
166 species ![]() |
177 homologs ![]() |
Eutheria | ![]() |
158 species ![]() |
169 homologs ![]() |
Boreoeutheria | ![]() |
149 species ![]() |
160 homologs ![]() |
Laurasiatheria | ![]() |
44 species ![]() |
48 homologs ![]() |
Carnivora | ![]() |
21 species ![]() |
26 homologs ![]() |
Felidae | ![]() |
5 species ![]() |
5 homologs ![]() |
Panthera | ![]() |
3 species ![]() |
3 homologs ![]() |
Tiger | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'