Root species for Fam118712 (rosids) | AlignView depth | PhyloView depth | |
---|---|---|---|
eukaryota | 158 species | ||
archaeplastida | 148 species | ||
viridiplantae | 142 species | ||
streptophyta | 138 species | ||
embryophyta | 136 species | ||
magnoliophyta | 133 species | ||
mesangiospermae | 131 species | ||
pentapetalae | 74 species | 35 homologs (oldest homol.) | |
rosids | 57 species | 32 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'