![]() |
![]() |
|
![]() |
![]() |
![]() |
Root species for ENSGT00390000010283.l (Odontoceti) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
|
Gnathostomata | ![]() |
385 species ![]() |
|
Euteleostomi | ![]() |
383 species ![]() |
|
Sarcopterygii | ![]() |
253 species ![]() |
|
Tetrapoda | ![]() |
251 species ![]() |
|
Amniota | ![]() |
247 species ![]() |
468 homologs (oldest homol.) ![]() |
Mammalia | ![]() |
193 species ![]() |
415 homologs ![]() |
Theria | ![]() |
191 species ![]() |
413 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
401 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
391 homologs ![]() |
Laurasiatheria | ![]() |
75 species ![]() |
132 homologs ![]() |
Laurasiatheria_a | ![]() |
71 species ![]() |
129 homologs ![]() |
Artiodactyla | ![]() |
37 species ![]() |
73 homologs ![]() |
Artiodactyla_a | ![]() |
33 species ![]() |
69 homologs ![]() |
Artiodactyla_b | ![]() |
29 species ![]() |
66 homologs ![]() |
Cetacea | ![]() |
11 species ![]() |
32 homologs (dupl. node) ![]() 7 homologs ![]() |
Odontoceti | ![]() |
9 species ![]() |
6 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'