Root species for GAP43 (ENSMMNG00015010690) (Narwhal) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | |
Gnathostomata | ~473 Mya | 385 species | 419 homologs (oldest homol.) |
Euteleostomi | ~420 Mya | 383 species | 417 homologs |
Sarcopterygii | ~400 Mya | 253 species | 263 homologs |
Tetrapoda | ~359 Mya | 251 species | 261 homologs |
Amniota | ~326 Mya | 247 species | 257 homologs |
Mammalia | ~184 Mya | 193 species | 203 homologs |
Theria | ~166 Mya | 191 species | 201 homologs |
Eutheria | ~102 Mya | 181 species | 191 homologs |
Boreoeutheria | ~95 Mya | 171 species | 181 homologs |
Laurasiatheria | ~88 Mya | 75 species | 74 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 71 homologs |
Artiodactyla | ~61 Mya | 37 species | 37 homologs |
Artiodactyla_a | ~61 Mya | 33 species | 33 homologs |
Artiodactyla_b | ~61 Mya | 29 species | 29 homologs |
Cetacea | ~34 Mya | 11 species | 11 homologs |
Odontoceti | ~33 Mya | 9 species | 9 homologs |
Odontoceti_a | ~33 Mya | 7 species | 7 homologs |
Odontoceti_b | ~33 Mya | 5 species | 5 homologs |
Monodontidae | ~7 Mya | 3 species | 3 homologs |
Narwhal | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'