Genomicus v107.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000008797 (Neognathae_c)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	408 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	406 homologs
Chordata	~550 Mya	393 species	402 homologs
Vertebrata	~550 Mya	389 species	396 homologs
Gnathostomata	~473 Mya	385 species	393 homologs
Euteleostomi	~420 Mya	383 species	391 homologs
Sarcopterygii	~400 Mya	253 species	242 homologs
Tetrapoda	~359 Mya	251 species	240 homologs
Amniota	~326 Mya	247 species	236 homologs
Sauria	~267 Mya	53 species	51 homologs
Archelosauria	~250 Mya	37 species	35 homologs
Archosauria	~236 Mya	27 species	24 homologs
Aves	~111 Mya	25 species	22 homologs
Neognathae	~105 Mya	23 species	21 homologs
Neognathae_b	~105 Mya	13 species	11 homologs
Neognathae_c	~105 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here