GenomicusFungi v43.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00930000005034.B.c.a.a.a.a (Emmonsia)		AlignView depth	PhyloView depth
Fungi	~10 Mya	713 species
Dikarya	~10 Mya	634 species
Ascomycota	~10 Mya	443 species
saccharomyceta	~10 Mya	429 species
Pezizomycotina	~10 Mya	334 species
leotiomyceta	~10 Mya	325 species	411 homologs (oldest homol. - dupl. node) 125 homologs (dupl. node) 75 homologs
Eurotiomycetes	~10 Mya	97 species	73 homologs
Eurotiomycetidae	~10 Mya	63 species	72 homologs
Onygenales	~10 Mya	36 species	44 homologs (dupl. node) 29 homologs (dupl. node) 23 homologs (dupl. node) 20 homologs
Ajellomycetaceae	~10 Mya	13 species	15 homologs (dupl. node) 11 homologs (dupl. node) 4 homologs
Emmonsia	~10 Mya	4 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'