Root species for ENSGT00600000084481 (Boreoeutheria) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 396 species | 401 homologs (oldest homol.) |
Bilateria | ~580 Mya | 394 species | 397 homologs |
Chordata | ~550 Mya | 390 species | 393 homologs |
Vertebrata | ~550 Mya | 386 species | 381 homologs |
Gnathostomata | ~473 Mya | 382 species | 378 homologs |
Euteleostomi | ~420 Mya | 380 species | 376 homologs |
Sarcopterygii | ~400 Mya | 250 species | 243 homologs |
Tetrapoda | ~359 Mya | 248 species | 241 homologs |
Amniota | ~326 Mya | 244 species | 237 homologs |
Mammalia | ~184 Mya | 190 species | 188 homologs |
Theria | ~166 Mya | 188 species | 186 homologs |
Eutheria | ~102 Mya | 178 species | 176 homologs |
Boreoeutheria | ~95 Mya | 168 species | 166 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'