Root species for PTF1A (ENSOARG00020024582) (Rambouillet Sheep) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 402 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 399 homologs |
Vertebrata | ~550 Mya | 389 species | 398 homologs |
Gnathostomata | ~473 Mya | 385 species | 394 homologs |
Euteleostomi | ~420 Mya | 383 species | 392 homologs |
Sarcopterygii | ~400 Mya | 253 species | 241 homologs |
Tetrapoda | ~359 Mya | 251 species | 239 homologs |
Amniota | ~326 Mya | 247 species | 235 homologs |
Mammalia | ~184 Mya | 193 species | 170 homologs |
Theria | ~166 Mya | 191 species | 168 homologs |
Eutheria | ~102 Mya | 181 species | 158 homologs |
Boreoeutheria | ~95 Mya | 171 species | 149 homologs |
Laurasiatheria | ~88 Mya | 75 species | 60 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 59 homologs |
Artiodactyla | ~61 Mya | 37 species | 33 homologs |
Artiodactyla_a | ~61 Mya | 33 species | 29 homologs |
Artiodactyla_b | ~61 Mya | 29 species | 26 homologs |
Pecora | ~27 Mya | 17 species | 14 homologs |
Percora_a | ~27 Mya | 15 species | 12 homologs |
Bovidae | ~25 Mya | 13 species | 10 homologs |
Caprinae | ~9 Mya | 3 species | 3 homologs |
Rambouillet Sheep | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'