Root species for amy2al2 (ENSCARG00000003585) (Goldfish) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | 300 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 385 species | 296 homologs |
Euteleostomi | ~420 Mya | 383 species | 295 homologs |
Actinopterygii | ~386 Mya | 129 species | 225 homologs |
Neopterygii | ~314 Mya | 127 species | 224 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 223 homologs |
Clupeocephala | ~229 Mya | 121 species | 222 homologs |
Otomorpha | ~221 Mya | 19 species | 60 homologs |
Otophysi | ~152 Mya | 15 species | 50 homologs (dupl. node) 43 homologs (dupl. node) 21 homologs |
Cyprinoidei | ~34 Mya | 7 species | 16 homologs (dupl. node) 4 homologs |
Cyprininae | ~34 Mya | 5 species | 2 homologs |
Goldfish | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'