![]() |
![]() |
|
![]() |
![]() |
![]() |
Root species for olig4 (ENSHHUG00000025220) (Huchen) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
|
Gnathostomata | ![]() |
385 species ![]() |
|
Euteleostomi | ![]() |
383 species ![]() |
158 homologs (oldest homol.) ![]() |
Actinopterygii | ![]() |
129 species ![]() |
146 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
144 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
142 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
138 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
108 homologs ![]() |
Protacanthopterygii | ![]() |
13 species ![]() |
23 homologs ![]() |
Salmoninae | ![]() |
11 species ![]() |
21 homologs (dupl. node) ![]() 10 homologs ![]() |
Huchen | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'