![]() |
![]() |
|
![]() |
![]() |
![]() |
Root species for DYNLL1 (ENSUPAG00010016994) (Arctic ground squirrel) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
1394 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
1392 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
1386 homologs (dupl. node) ![]() 1380 homologs (dupl. node) ![]() 823 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
819 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
818 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
816 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
651 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
649 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
645 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
534 homologs ![]() |
Theria | ![]() |
191 species ![]() |
532 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
502 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
489 homologs ![]() |
Euarchontoglires | ![]() |
95 species ![]() |
228 homologs ![]() |
Euarchontoglires_A | ![]() |
47 species ![]() |
122 homologs ![]() |
Glires | ![]() |
45 species ![]() |
114 homologs ![]() |
Rodentia | ![]() |
41 species ![]() |
106 homologs ![]() |
Rodentia_A | ![]() |
15 species ![]() |
38 homologs (dupl. node) ![]() 23 homologs ![]() |
Sciuridae | ![]() |
7 species ![]() |
7 homologs ![]() |
Marmotini | ![]() |
5 species ![]() |
5 homologs ![]() |
Marmotini_b | ![]() |
3 species ![]() |
3 homologs ![]() |
Arctic ground squirrel | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'