GenomicusFungi v43.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for CAGL0F01529g (Candida glabrata)		AlignView depth	PhyloView depth
Fungi	~10 Mya	713 species	418 homologs (oldest homol.)
Dikarya	~10 Mya	634 species	365 homologs (dupl. node) 359 homologs
Ascomycota	~10 Mya	443 species	129 homologs
saccharomyceta	~10 Mya	429 species	115 homologs
Saccharomycetales	~10 Mya	94 species	114 homologs (dupl. node) 109 homologs (dupl. node) 102 homologs (dupl. node) 99 homologs (dupl. node) 42 homologs
Saccharomycetaceae	~10 Mya	37 species	39 homologs (dupl. node) 29 homologs
Candida glabrata	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'