Root species for ERG3 (YLR056W) (Saccharomyces cerevisiae S288C) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi | ~10 Mya | 713 species | |
Dikarya | ~10 Mya | 634 species | 680 homologs (oldest homol.) |
Ascomycota | ~10 Mya | 443 species | 674 homologs (dupl. node) 606 homologs (dupl. node) 463 homologs (dupl. node) 145 homologs (dupl. node) 134 homologs |
saccharomyceta | ~10 Mya | 429 species | 128 homologs |
Saccharomycetales | ~10 Mya | 94 species | 127 homologs (dupl. node) 125 homologs (dupl. node) 122 homologs (dupl. node) 116 homologs (dupl. node) 67 homologs |
Saccharomycetaceae | ~10 Mya | 37 species | 50 homologs (dupl. node) 26 homologs |
Saccharomyces | ~10 Mya | 6 species | 6 homologs |
Saccharomyces cerevisiae S288C | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'